miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 3' -57.5 NC_002794.1 + 195600 0.71 0.644868
Target:  5'- uGCCGCCGcGCGCGcgGAcGcGAGGACg- -3'
miRNA:   3'- gCGGUGGC-CGCGCa-CUaC-CUUCUGaa -5'
10918 3' -57.5 NC_002794.1 + 193239 0.66 0.870197
Target:  5'- gGCCGCCGGCGCGcguccccagcaaaUGA-GGA--GCUc -3'
miRNA:   3'- gCGGUGGCCGCGC-------------ACUaCCUucUGAa -5'
10918 3' -57.5 NC_002794.1 + 182781 0.7 0.674872
Target:  5'- gCGCgACCGGCGCGaagucccGGggGACg- -3'
miRNA:   3'- -GCGgUGGCCGCGCacua---CCuuCUGaa -5'
10918 3' -57.5 NC_002794.1 + 165112 0.69 0.762154
Target:  5'- cCGCgGCUGGCGCGcUGGaggaucUGGAAGcGCUg -3'
miRNA:   3'- -GCGgUGGCCGCGC-ACU------ACCUUC-UGAa -5'
10918 3' -57.5 NC_002794.1 + 160305 0.69 0.733745
Target:  5'- gCGCuCGCgCGcGCGCGUGGUGGcccAGGCg- -3'
miRNA:   3'- -GCG-GUG-GC-CGCGCACUACCu--UCUGaa -5'
10918 3' -57.5 NC_002794.1 + 155341 0.69 0.714368
Target:  5'- gGCCGCCGaCGCGccGAcGGGAGACg- -3'
miRNA:   3'- gCGGUGGCcGCGCa-CUaCCUUCUGaa -5'
10918 3' -57.5 NC_002794.1 + 151966 0.69 0.714368
Target:  5'- cCGUCGCCGGCGUcucGUGA-GGAGcGGCg- -3'
miRNA:   3'- -GCGGUGGCCGCG---CACUaCCUU-CUGaa -5'
10918 3' -57.5 NC_002794.1 + 151134 0.66 0.863608
Target:  5'- aCGUCgGCCGGCGCc-GccGGAGGGCUa -3'
miRNA:   3'- -GCGG-UGGCCGCGcaCuaCCUUCUGAa -5'
10918 3' -57.5 NC_002794.1 + 133349 0.67 0.832423
Target:  5'- gCGCCGCCGGCGCcuccgcccaccGUGAc-GAAGAg-- -3'
miRNA:   3'- -GCGGUGGCCGCG-----------CACUacCUUCUgaa -5'
10918 3' -57.5 NC_002794.1 + 131752 0.66 0.898054
Target:  5'- aCGCgACCGGCGCGUcugcacgcGGucGACg- -3'
miRNA:   3'- -GCGgUGGCCGCGCAcua-----CCuuCUGaa -5'
10918 3' -57.5 NC_002794.1 + 124561 0.71 0.60476
Target:  5'- aGCCGCCGGCGCGcuc-GGgcGGCg- -3'
miRNA:   3'- gCGGUGGCCGCGCacuaCCuuCUGaa -5'
10918 3' -57.5 NC_002794.1 + 104748 0.66 0.891594
Target:  5'- aCGCCgggcaGCUGGUGcCGUGcGUGGAGGAg-- -3'
miRNA:   3'- -GCGG-----UGGCCGC-GCAC-UACCUUCUgaa -5'
10918 3' -57.5 NC_002794.1 + 98069 0.66 0.891594
Target:  5'- uGCCAuCUGGCGCu---UGGGAGACc- -3'
miRNA:   3'- gCGGU-GGCCGCGcacuACCUUCUGaa -5'
10918 3' -57.5 NC_002794.1 + 94593 0.66 0.897418
Target:  5'- cCGCCcCCGGCGCc-GGUGGcggcggcggggagGAGACg- -3'
miRNA:   3'- -GCGGuGGCCGCGcaCUACC-------------UUCUGaa -5'
10918 3' -57.5 NC_002794.1 + 88643 0.67 0.856098
Target:  5'- gCGCCGCCgggcGGCGCGcGAcggGGgcGGCg- -3'
miRNA:   3'- -GCGGUGG----CCGCGCaCUa--CCuuCUGaa -5'
10918 3' -57.5 NC_002794.1 + 88318 0.66 0.884916
Target:  5'- gCGCCGgCGGCGaCGaccgcGGUGGggGAg-- -3'
miRNA:   3'- -GCGGUgGCCGC-GCa----CUACCuuCUgaa -5'
10918 3' -57.5 NC_002794.1 + 73543 0.66 0.863608
Target:  5'- cCGUCGCCGuGCGCGUGGcguUGGcccuGGCc- -3'
miRNA:   3'- -GCGGUGGC-CGCGCACU---ACCuu--CUGaa -5'
10918 3' -57.5 NC_002794.1 + 65200 0.73 0.539452
Target:  5'- cCGCCGCCGGcCGCGgGcuccgccgcggccucGUGGGAGGCg- -3'
miRNA:   3'- -GCGGUGGCC-GCGCaC---------------UACCUUCUGaa -5'
10918 3' -57.5 NC_002794.1 + 58284 0.7 0.704573
Target:  5'- uCGCCGCCGGgGCcggaGUGcgGGGAGcCg- -3'
miRNA:   3'- -GCGGUGGCCgCG----CACuaCCUUCuGaa -5'
10918 3' -57.5 NC_002794.1 + 58195 0.7 0.668888
Target:  5'- gCGCCGCUGGUGCGgacgcacgguccaguUGAggcGGAAGGCc- -3'
miRNA:   3'- -GCGGUGGCCGCGC---------------ACUa--CCUUCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.