Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 56175 | 0.66 | 0.878023 |
Target: 5'- aGCCGCCGGC-CGUGccGGAcAGGu-- -3' miRNA: 3'- gCGGUGGCCGcGCACuaCCU-UCUgaa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 54200 | 0.73 | 0.535561 |
Target: 5'- gGCCGCCGGCGgGUcGAgcGAAGACg- -3' miRNA: 3'- gCGGUGGCCGCgCA-CUacCUUCUGaa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 52122 | 0.67 | 0.848393 |
Target: 5'- uCGcCCGCCGGaCGCGccGccGGggGGCUc -3' miRNA: 3'- -GC-GGUGGCC-GCGCa-CuaCCuuCUGAa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 50943 | 0.66 | 0.884236 |
Target: 5'- cCGCCGCCGGCaccaaccGCGccaaGGUGGugcuGGACc- -3' miRNA: 3'- -GCGGUGGCCG-------CGCa---CUACCu---UCUGaa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 46583 | 0.66 | 0.889614 |
Target: 5'- cCGCCGgCGGCGCGgcggcucgcucacGGggGGCg- -3' miRNA: 3'- -GCGGUgGCCGCGCacua---------CCuuCUGaa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 46454 | 0.66 | 0.889614 |
Target: 5'- uCGCCGCgcgugugugccgugUGGUGUGUGugaaggGGAAGGCUc -3' miRNA: 3'- -GCGGUG--------------GCCGCGCACua----CCUUCUGAa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 19663 | 0.67 | 0.824172 |
Target: 5'- aCGCUguACgGGUgGCG-GAUGGAAGGCUc -3' miRNA: 3'- -GCGG--UGgCCG-CGCaCUACCUUCUGAa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 8098 | 0.68 | 0.815753 |
Target: 5'- aCGCCGCCGGCGCc-GGUcgccucgaccccGGAGGAa-- -3' miRNA: 3'- -GCGGUGGCCGCGcaCUA------------CCUUCUgaa -5' |
|||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 3715 | 0.66 | 0.884916 |
Target: 5'- uGCUGCCGGCGCGgucGcgGcGGAGcCUg -3' miRNA: 3'- gCGGUGGCCGCGCa--CuaC-CUUCuGAa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home