miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 124175 0.66 0.987441
Target:  5'- uCGAucAGCUCGccgcGGAaguCGCGCGuGAAGGu -3'
miRNA:   3'- -GCU--UCGGGU----UCUguuGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 737 0.66 0.987441
Target:  5'- ---cGCCCGcGGC-GCGCGCGGGc-- -3'
miRNA:   3'- gcuuCGGGUuCUGuUGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 37715 0.66 0.987441
Target:  5'- --cAGCUCGcGGCGACGaGgGGAAGGu -3'
miRNA:   3'- gcuUCGGGUuCUGUUGCgCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 116431 0.66 0.987441
Target:  5'- -aGGGCCCGGcGGCGGCggcggcgaccgGCGCGGAGa- -3'
miRNA:   3'- gcUUCGGGUU-CUGUUG-----------CGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 101440 0.66 0.987289
Target:  5'- uGggGCgCGcccGACAACcuggaggccuacgGCGCGGAGGa -3'
miRNA:   3'- gCuuCGgGUu--CUGUUG-------------CGCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 15530 0.66 0.986507
Target:  5'- uGAAGCCCAGGAUGaucacgagcaucgccACGCagaggacgaccgGCGcGAGGa -3'
miRNA:   3'- gCUUCGGGUUCUGU---------------UGCG------------CGCcUUCC- -5'
10918 5' -53.6 NC_002794.1 + 136962 0.66 0.986507
Target:  5'- uCGAGGCCCGcaaccacgggaucucGGACGugcCGCGCcugcacgccauGGAcgAGGa -3'
miRNA:   3'- -GCUUCGGGU---------------UCUGUu--GCGCG-----------CCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 61714 0.66 0.986507
Target:  5'- gGAAGCUCGGuccguguugcuggccGugGcCGCGCGGAuGGc -3'
miRNA:   3'- gCUUCGGGUU---------------CugUuGCGCGCCUuCC- -5'
10918 5' -53.6 NC_002794.1 + 171966 0.66 0.985855
Target:  5'- cCGAGGgCCCGGGagccgaguGCAGCaGCGUGGgcGa -3'
miRNA:   3'- -GCUUC-GGGUUC--------UGUUG-CGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 41496 0.66 0.985855
Target:  5'- gCGcGGUCCAGGccGCGGCG-GCGGcGGGc -3'
miRNA:   3'- -GCuUCGGGUUC--UGUUGCgCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 137327 0.66 0.985855
Target:  5'- cCGAGGCCUucGccGCGGCGCGCGcGcugcuGGc -3'
miRNA:   3'- -GCUUCGGGuuC--UGUUGCGCGC-Cuu---CC- -5'
10918 5' -53.6 NC_002794.1 + 160715 0.66 0.985855
Target:  5'- aCGggGCagcucgugucgaCCGAGgaGCAcCGCGCGGAGu- -3'
miRNA:   3'- -GCuuCG------------GGUUC--UGUuGCGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 151514 0.66 0.985855
Target:  5'- aCGgcGCCggCGAGACcgagaGCGCGGcGGGc -3'
miRNA:   3'- -GCuuCGG--GUUCUGuug--CGCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 183060 0.66 0.98412
Target:  5'- aCGAucGGCCCGGGGCc-CGUGCucGAGGu -3'
miRNA:   3'- -GCU--UCGGGUUCUGuuGCGCGccUUCC- -5'
10918 5' -53.6 NC_002794.1 + 74317 0.66 0.98412
Target:  5'- aCGGAGCCCGGuGACGACGagacgaGCuucGGGa -3'
miRNA:   3'- -GCUUCGGGUU-CUGUUGCg-----CGccuUCC- -5'
10918 5' -53.6 NC_002794.1 + 91337 0.66 0.98412
Target:  5'- uGAGGCgCGGGugG-CGCG-GGAAGa -3'
miRNA:   3'- gCUUCGgGUUCugUuGCGCgCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 71850 0.66 0.98412
Target:  5'- uGAAGC---GGGCGGC-CGCGGAAGa -3'
miRNA:   3'- gCUUCGgguUCUGUUGcGCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 17580 0.66 0.98412
Target:  5'- aCGggGUcggUCGAG-CGACGgcucgaCGCGGGAGGc -3'
miRNA:   3'- -GCuuCG---GGUUCuGUUGC------GCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 10476 0.66 0.982228
Target:  5'- gCGAGGCCagccagAAGACgAGgGCGCGGGc-- -3'
miRNA:   3'- -GCUUCGGg-----UUCUG-UUgCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 94587 0.66 0.982228
Target:  5'- cCGgcGCCgGuGGCGGCgGCG-GGGAGGa -3'
miRNA:   3'- -GCuuCGGgUuCUGUUG-CGCgCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.