miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 57925 0.68 0.94474
Target:  5'- uCGAugAGCUgGAGGCAGCG-GCGGAu-- -3'
miRNA:   3'- -GCU--UCGGgUUCUGUUGCgCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 193718 0.68 0.946485
Target:  5'- gGAAGUCCGAGACGAC-CGuCGGccuuauacggcaaccGGGGc -3'
miRNA:   3'- gCUUCGGGUUCUGUUGcGC-GCC---------------UUCC- -5'
10918 5' -53.6 NC_002794.1 + 50381 0.68 0.953099
Target:  5'- cCGAAGgCCGaggaucgcgaGGAUGAgGCGUGcGAAGGg -3'
miRNA:   3'- -GCUUCgGGU----------UCUGUUgCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 64678 0.68 0.956941
Target:  5'- -cGAGCCgGAGACAGCacgGCGcCGGGGcGGc -3'
miRNA:   3'- gcUUCGGgUUCUGUUG---CGC-GCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 87701 0.68 0.960562
Target:  5'- gGGAGCgCCGgcgcgaAGACGccgcgACGCGCGGAc-- -3'
miRNA:   3'- gCUUCG-GGU------UCUGU-----UGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 123341 0.68 0.960562
Target:  5'- cCGAAGUCCAccucgaaguAGACGcgccGCGCGUGGucGc -3'
miRNA:   3'- -GCUUCGGGU---------UCUGU----UGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 193656 0.68 0.960562
Target:  5'- gGAAGUCCGAGACGAC-CGgGGc--- -3'
miRNA:   3'- gCUUCGGGUUCUGUUGcGCgCCuucc -5'
10918 5' -53.6 NC_002794.1 + 49682 0.68 0.960562
Target:  5'- aGGAGCgcuUCGAGGcCGAgGCGCGGGccuuGGGa -3'
miRNA:   3'- gCUUCG---GGUUCU-GUUgCGCGCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 56027 0.68 0.956941
Target:  5'- aCGAAGaCCAAGAgGuUGaGCGGGAGGc -3'
miRNA:   3'- -GCUUCgGGUUCUgUuGCgCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 18335 0.68 0.956941
Target:  5'- gCGAGGUgaCAAGGagggGugGCGCGGAAcGGa -3'
miRNA:   3'- -GCUUCGg-GUUCUg---UugCGCGCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 9172 0.68 0.956941
Target:  5'- ---cGUCCAGGAucaCGACGaCGCGGgcGGu -3'
miRNA:   3'- gcuuCGGGUUCU---GUUGC-GCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 56475 0.69 0.925248
Target:  5'- aGguGCCCAAGACGGgcuugaccagguCGUGCGcGAAGa -3'
miRNA:   3'- gCuuCGGGUUCUGUU------------GCGCGC-CUUCc -5'
10918 5' -53.6 NC_002794.1 + 8365 0.69 0.925248
Target:  5'- aCGAGGCCgCGcAGGCGgccaggGCGCccGCGGAGGa -3'
miRNA:   3'- -GCUUCGG-GU-UCUGU------UGCG--CGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 113371 0.69 0.935461
Target:  5'- gCGAcgcGGCCCGccGCGACGCGCGaGAc-- -3'
miRNA:   3'- -GCU---UCGGGUucUGUUGCGCGC-CUucc -5'
10918 5' -53.6 NC_002794.1 + 126123 0.69 0.925248
Target:  5'- cCGGAGCgCCAcggccGGCGACGCcGCGGGGa- -3'
miRNA:   3'- -GCUUCG-GGUu----CUGUUGCG-CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 195618 0.69 0.935461
Target:  5'- aCGAAaCCCAccccGGACugccgccgcGCGCGCGGAcgcgAGGa -3'
miRNA:   3'- -GCUUcGGGU----UCUGu--------UGCGCGCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 68177 0.69 0.935461
Target:  5'- -cGAGCCCGgucgGGGCGACGUggGUGGGacAGGa -3'
miRNA:   3'- gcUUCGGGU----UCUGUUGCG--CGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 14809 0.69 0.935461
Target:  5'- aCGAAGCUCGucucGGAgAACGCGggucCGGGcAGGg -3'
miRNA:   3'- -GCUUCGGGU----UCUgUUGCGC----GCCU-UCC- -5'
10918 5' -53.6 NC_002794.1 + 78216 0.69 0.940216
Target:  5'- gCGcGGCCCcGGACGaagagcgccACGCGCGGcGGc -3'
miRNA:   3'- -GCuUCGGGuUCUGU---------UGCGCGCCuUCc -5'
10918 5' -53.6 NC_002794.1 + 194991 0.69 0.91979
Target:  5'- ---cGCCCGcgAGGCGgucggcguGCGCGCGGGccGGGu -3'
miRNA:   3'- gcuuCGGGU--UCUGU--------UGCGCGCCU--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.