Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10918 | 5' | -53.6 | NC_002794.1 | + | 133376 | 0.69 | 0.940216 |
Target: 5'- uCGAcgAGCgCGAGugGACG-GCGGgcGGc -3' miRNA: 3'- -GCU--UCGgGUUCugUUGCgCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 78216 | 0.69 | 0.940216 |
Target: 5'- gCGcGGCCCcGGACGaagagcgccACGCGCGGcGGc -3' miRNA: 3'- -GCuUCGGGuUCUGU---------UGCGCGCCuUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 14809 | 0.69 | 0.935461 |
Target: 5'- aCGAAGCUCGucucGGAgAACGCGggucCGGGcAGGg -3' miRNA: 3'- -GCUUCGGGU----UCUgUUGCGC----GCCU-UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 68177 | 0.69 | 0.935461 |
Target: 5'- -cGAGCCCGgucgGGGCGACGUggGUGGGacAGGa -3' miRNA: 3'- gcUUCGGGU----UCUGUUGCG--CGCCU--UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 195618 | 0.69 | 0.935461 |
Target: 5'- aCGAAaCCCAccccGGACugccgccgcGCGCGCGGAcgcgAGGa -3' miRNA: 3'- -GCUUcGGGU----UCUGu--------UGCGCGCCU----UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 126123 | 0.69 | 0.925248 |
Target: 5'- cCGGAGCgCCAcggccGGCGACGCcGCGGGGa- -3' miRNA: 3'- -GCUUCG-GGUu----CUGUUGCG-CGCCUUcc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 161134 | 0.7 | 0.893675 |
Target: 5'- aCGAGGCgCGGGcggccgcagagcgcGCGACgGCGCGGuGGGa -3' miRNA: 3'- -GCUUCGgGUUC--------------UGUUG-CGCGCCuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 85360 | 0.7 | 0.886999 |
Target: 5'- gCGgcGCCUggagaaagucggucGAGAuCGGCGUGCGGGAGa -3' miRNA: 3'- -GCuuCGGG--------------UUCU-GUUGCGCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 59785 | 0.7 | 0.882194 |
Target: 5'- gCGAAGCgCAua--AACGCGgGGGAGGc -3' miRNA: 3'- -GCUUCGgGUucugUUGCGCgCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 93691 | 0.7 | 0.882194 |
Target: 5'- cCGggGCCaucGugG-CGCGCGGcGAGGa -3' miRNA: 3'- -GCuuCGGguuCugUuGCGCGCC-UUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 97240 | 0.7 | 0.882194 |
Target: 5'- --cAGCCuCAAGAucuuCGugGCGgGGAAGGu -3' miRNA: 3'- gcuUCGG-GUUCU----GUugCGCgCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 105405 | 0.7 | 0.882194 |
Target: 5'- -cGAGCUuuucggCGAGGCcGCGCGCGGcGGGg -3' miRNA: 3'- gcUUCGG------GUUCUGuUGCGCGCCuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 58236 | 0.7 | 0.902018 |
Target: 5'- gCGguGCCCAcGACGACGUccugGCGGGcgccGGGc -3' miRNA: 3'- -GCuuCGGGUuCUGUUGCG----CGCCU----UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 115451 | 0.7 | 0.895635 |
Target: 5'- cCGcGGCCCAGGugG-CGC-CGGgcGGg -3' miRNA: 3'- -GCuUCGGGUUCugUuGCGcGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 147716 | 0.7 | 0.902018 |
Target: 5'- uCGAAGCCCucGACGAgGCaGCGGc--- -3' miRNA: 3'- -GCUUCGGGuuCUGUUgCG-CGCCuucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 100081 | 0.7 | 0.902018 |
Target: 5'- aCGgcGgCCGGGGCGagagGCGCGgCGGAGGa -3' miRNA: 3'- -GCuuCgGGUUCUGU----UGCGC-GCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 57103 | 0.7 | 0.902018 |
Target: 5'- cCGggGgCCGAGucGCGGCGgucgGUGGAGGGg -3' miRNA: 3'- -GCuuCgGGUUC--UGUUGCg---CGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 74541 | 0.7 | 0.908174 |
Target: 5'- gCGGuuGGCCCucGAGGCGcCGCGCGGcuGAGa -3' miRNA: 3'- -GCU--UCGGG--UUCUGUuGCGCGCC--UUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 85538 | 0.7 | 0.902018 |
Target: 5'- uCGccGCCgc-GACGcCGCGCGGggGGu -3' miRNA: 3'- -GCuuCGGguuCUGUuGCGCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 125691 | 0.7 | 0.881499 |
Target: 5'- aCGAAGCCCAGGuaccgaugguaccACAugGUggaGCGGAGa- -3' miRNA: 3'- -GCUUCGGGUUC-------------UGUugCG---CGCCUUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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