miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 71698 0.86 0.185926
Target:  5'- gCGggGCCCGGGAgAGCGuCGgGGAGGGg -3'
miRNA:   3'- -GCuuCGGGUUCUgUUGC-GCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 67400 0.82 0.307081
Target:  5'- cCGGAGCCCAGGACGACcggucaccggGuCGCGGAccGGGg -3'
miRNA:   3'- -GCUUCGGGUUCUGUUG----------C-GCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 105685 0.82 0.328638
Target:  5'- uGAAGCCUccGAgGACGCGCGGggGc -3'
miRNA:   3'- gCUUCGGGuuCUgUUGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 181310 0.76 0.6179
Target:  5'- ---cGCCCccGuCGACGCGCGGGAGGc -3'
miRNA:   3'- gcuuCGGGuuCuGUUGCGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 99965 0.76 0.5876
Target:  5'- gCGAGGgCgCAcGACGugGUGCGGGAGGu -3'
miRNA:   3'- -GCUUCgG-GUuCUGUugCGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 47723 0.75 0.667497
Target:  5'- gCGggGCCgcCGGGGCGAgggcgguCGCGaCGGAAGGa -3'
miRNA:   3'- -GCuuCGG--GUUCUGUU-------GCGC-GCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 79989 0.75 0.648293
Target:  5'- aGggGUCCGGGGCGuccggggcguccGCggaGCGCGGggGGu -3'
miRNA:   3'- gCuuCGGGUUCUGU------------UG---CGCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 9022 0.74 0.71838
Target:  5'- aGgcGCCC--GACAGCGCGCGGgcGc -3'
miRNA:   3'- gCuuCGGGuuCUGUUGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 184992 0.74 0.727197
Target:  5'- gGAAGCCgAGcgugaccGACGACGgGCGGgcGGa -3'
miRNA:   3'- gCUUCGGgUU-------CUGUUGCgCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 74829 0.74 0.728173
Target:  5'- aGAGGCCgGAGAgCGGCGCGuCGGGcgccgcgaagaAGGa -3'
miRNA:   3'- gCUUCGGgUUCU-GUUGCGC-GCCU-----------UCC- -5'
10918 5' -53.6 NC_002794.1 + 12527 0.73 0.784911
Target:  5'- aCGucGCCCAGGuucagcacguACAGCGCGcCGGAccccAGGu -3'
miRNA:   3'- -GCuuCGGGUUC----------UGUUGCGC-GCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 88646 0.73 0.784911
Target:  5'- cCGgcGCCgCcGGGCGGCGCGCGacGggGGc -3'
miRNA:   3'- -GCuuCGG-GuUCUGUUGCGCGC--CuuCC- -5'
10918 5' -53.6 NC_002794.1 + 83752 0.73 0.77574
Target:  5'- aGgcGCggCCGGGACGACgGCGCgGGGAGGu -3'
miRNA:   3'- gCuuCG--GGUUCUGUUG-CGCG-CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 101826 0.72 0.811582
Target:  5'- cCGGcgGGCCCGAGAgCGGCG-GCGGugcGGGg -3'
miRNA:   3'- -GCU--UCGGGUUCU-GUUGCgCGCCu--UCC- -5'
10918 5' -53.6 NC_002794.1 + 172161 0.72 0.811582
Target:  5'- cCGAGGCCCcgAAGcgucccgaACcGCGCGCGGcGGGc -3'
miRNA:   3'- -GCUUCGGG--UUC--------UGuUGCGCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 150133 0.72 0.834365
Target:  5'- --cAGCCCGGGcgucuccacguagcGCAGCGCGCGGcGGa -3'
miRNA:   3'- gcuUCGGGUUC--------------UGUUGCGCGCCuUCc -5'
10918 5' -53.6 NC_002794.1 + 80599 0.72 0.828579
Target:  5'- uCGggGCUCAggcaGGugAACgGCGUGGAcacGGGg -3'
miRNA:   3'- -GCuuCGGGU----UCugUUG-CGCGCCU---UCC- -5'
10918 5' -53.6 NC_002794.1 + 53504 0.72 0.811582
Target:  5'- gGAGGCggCgGAGGCGGCGgagGCGGAGGGa -3'
miRNA:   3'- gCUUCG--GgUUCUGUUGCg--CGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 67780 0.71 0.867146
Target:  5'- cCGAauGGCCCGAGuCGGCGaCGgGGAgcucgacGGGg -3'
miRNA:   3'- -GCU--UCGGGUUCuGUUGC-GCgCCU-------UCC- -5'
10918 5' -53.6 NC_002794.1 + 103615 0.71 0.875146
Target:  5'- aGGAGCCCucGGCGGCGuCGCuGgcGGc -3'
miRNA:   3'- gCUUCGGGuuCUGUUGC-GCGcCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.