miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 134115 0.71 0.860415
Target:  5'- gGAAGCCCGc-GCGAgGUGUGcGAGGGg -3'
miRNA:   3'- gCUUCGGGUucUGUUgCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 165784 0.71 0.852743
Target:  5'- gGucGCCCGGucGACGagGCGCGCGGccGGu -3'
miRNA:   3'- gCuuCGGGUU--CUGU--UGCGCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 103615 0.71 0.875146
Target:  5'- aGGAGCCCucGGCGGCGuCGCuGgcGGc -3'
miRNA:   3'- gCUUCGGGuuCUGUUGC-GCGcCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 79449 0.71 0.867884
Target:  5'- gCGggGCgCGAGcacCAGgGCGCGGGucAGGa -3'
miRNA:   3'- -GCuuCGgGUUCu--GUUgCGCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 174366 0.71 0.877991
Target:  5'- uCGGAGCCUccGACcgucuccggcucgagGACGgGCGGAucGGGa -3'
miRNA:   3'- -GCUUCGGGuuCUG---------------UUGCgCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 69473 0.71 0.875146
Target:  5'- cCGggGCCUgcgcGGCGGCGUGCGcGgcGGu -3'
miRNA:   3'- -GCuuCGGGuu--CUGUUGCGCGC-CuuCC- -5'
10918 5' -53.6 NC_002794.1 + 11372 0.71 0.860415
Target:  5'- gCGggGCCCcGGACGcccggGCGgCGCGGGc-- -3'
miRNA:   3'- -GCuuCGGGuUCUGU-----UGC-GCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 67780 0.71 0.867146
Target:  5'- cCGAauGGCCCGAGuCGGCGaCGgGGAgcucgacGGGg -3'
miRNA:   3'- -GCU--UCGGGUUCuGUUGC-GCgCCU-------UCC- -5'
10918 5' -53.6 NC_002794.1 + 100081 0.7 0.902018
Target:  5'- aCGgcGgCCGGGGCGagagGCGCGgCGGAGGa -3'
miRNA:   3'- -GCuuCgGGUUCUGU----UGCGC-GCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 74541 0.7 0.908174
Target:  5'- gCGGuuGGCCCucGAGGCGcCGCGCGGcuGAGa -3'
miRNA:   3'- -GCU--UCGGG--UUCUGUuGCGCGCC--UUCc -5'
10918 5' -53.6 NC_002794.1 + 93691 0.7 0.882194
Target:  5'- cCGggGCCaucGugG-CGCGCGGcGAGGa -3'
miRNA:   3'- -GCuuCGGguuCugUuGCGCGCC-UUCC- -5'
10918 5' -53.6 NC_002794.1 + 105405 0.7 0.882194
Target:  5'- -cGAGCUuuucggCGAGGCcGCGCGCGGcGGGg -3'
miRNA:   3'- gcUUCGG------GUUCUGuUGCGCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 115451 0.7 0.895635
Target:  5'- cCGcGGCCCAGGugG-CGC-CGGgcGGg -3'
miRNA:   3'- -GCuUCGGGUUCugUuGCGcGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 147716 0.7 0.902018
Target:  5'- uCGAAGCCCucGACGAgGCaGCGGc--- -3'
miRNA:   3'- -GCUUCGGGuuCUGUUgCG-CGCCuucc -5'
10918 5' -53.6 NC_002794.1 + 85538 0.7 0.902018
Target:  5'- uCGccGCCgc-GACGcCGCGCGGggGGu -3'
miRNA:   3'- -GCuuCGGguuCUGUuGCGCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 125691 0.7 0.881499
Target:  5'- aCGAAGCCCAGGuaccgaugguaccACAugGUggaGCGGAGa- -3'
miRNA:   3'- -GCUUCGGGUUC-------------UGUugCG---CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 97240 0.7 0.882194
Target:  5'- --cAGCCuCAAGAucuuCGugGCGgGGAAGGu -3'
miRNA:   3'- gcuUCGG-GUUCU----GUugCGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 10961 0.7 0.908174
Target:  5'- -cGGGCCCGGGcACu-CGCGCGGGAa- -3'
miRNA:   3'- gcUUCGGGUUC-UGuuGCGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 59785 0.7 0.882194
Target:  5'- gCGAAGCgCAua--AACGCGgGGGAGGc -3'
miRNA:   3'- -GCUUCGgGUucugUUGCGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 58236 0.7 0.902018
Target:  5'- gCGguGCCCAcGACGACGUccugGCGGGcgccGGGc -3'
miRNA:   3'- -GCuuCGGGUuCUGUUGCG----CGCCU----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.