miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 140566 0.67 0.97015
Target:  5'- aCGAGGgCgGcGGCGGCGuCGCGGcGGGc -3'
miRNA:   3'- -GCUUCgGgUuCUGUUGC-GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 52568 0.67 0.97015
Target:  5'- uCGggGUCgggCGGGuGCAGCGCGgCGGGAuGGa -3'
miRNA:   3'- -GCuuCGG---GUUC-UGUUGCGC-GCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 91400 0.67 0.967161
Target:  5'- -cGAGCCC-GGGCGGCGUgugcaggauGCGGgcGGc -3'
miRNA:   3'- gcUUCGGGuUCUGUUGCG---------CGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 88321 0.67 0.967161
Target:  5'- gCGgcGCCgGcGGCGACGacCGCGGuGGGg -3'
miRNA:   3'- -GCuuCGGgUuCUGUUGC--GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 107823 0.67 0.97015
Target:  5'- aGAcGGUaaugCUAAGACAguaaacGCGCGCGcGAGGGg -3'
miRNA:   3'- gCU-UCG----GGUUCUGU------UGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 189370 0.67 0.963967
Target:  5'- uCGAGG-CCGAGAUGACccuCGCGGuGGGu -3'
miRNA:   3'- -GCUUCgGGUUCUGUUGc--GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 87541 0.67 0.963967
Target:  5'- gCGGugGGUCUuGGACGGCgGCGCaGGAGGa -3'
miRNA:   3'- -GCU--UCGGGuUCUGUUG-CGCGcCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 60399 0.67 0.972122
Target:  5'- cCGggGCCCGcggccgacGACGacgccgccgucgacGCGCGCGGGc-- -3'
miRNA:   3'- -GCuuCGGGUu-------CUGU--------------UGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 56224 0.67 0.963967
Target:  5'- gCGAAGCCCAcGGuGCAGCugGUGUaguacaGGAGGGa -3'
miRNA:   3'- -GCUUCGGGU-UC-UGUUG--CGCG------CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 140506 0.67 0.972938
Target:  5'- cCGAGGCggCCGAGGCGGcCGagGCGGccGAGGc -3'
miRNA:   3'- -GCUUCG--GGUUCUGUU-GCg-CGCC--UUCC- -5'
10918 5' -53.6 NC_002794.1 + 60242 0.67 0.963636
Target:  5'- gGAucGGUCgCAGGuugacgucggcgaACAACaGCGCGGAGGGu -3'
miRNA:   3'- gCU--UCGG-GUUC-------------UGUUG-CGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 12805 0.67 0.963967
Target:  5'- aGuAGCCCAGGuCGcuCGCGCuGGAcGGg -3'
miRNA:   3'- gCuUCGGGUUCuGUu-GCGCG-CCUuCC- -5'
10918 5' -53.6 NC_002794.1 + 136962 0.66 0.986507
Target:  5'- uCGAGGCCCGcaaccacgggaucucGGACGugcCGCGCcugcacgccauGGAcgAGGa -3'
miRNA:   3'- -GCUUCGGGU---------------UCUGUu--GCGCG-----------CCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 17580 0.66 0.98412
Target:  5'- aCGggGUcggUCGAG-CGACGgcucgaCGCGGGAGGc -3'
miRNA:   3'- -GCuuCG---GGUUCuGUUGC------GCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 71850 0.66 0.98412
Target:  5'- uGAAGC---GGGCGGC-CGCGGAAGa -3'
miRNA:   3'- gCUUCGgguUCUGUUGcGCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 91426 0.66 0.980171
Target:  5'- --cGGCCC-GGACGcCGcCGCGGgcGGc -3'
miRNA:   3'- gcuUCGGGuUCUGUuGC-GCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 65861 0.66 0.980171
Target:  5'- uCGAacGGCCCcGGA--GCGUGCGGGucGGc -3'
miRNA:   3'- -GCU--UCGGGuUCUguUGCGCGCCUu-CC- -5'
10918 5' -53.6 NC_002794.1 + 101723 0.66 0.980171
Target:  5'- gGAAgGUCCGAccgcGGCGGCGCuggacgGUGGggGGg -3'
miRNA:   3'- gCUU-CGGGUU----CUGUUGCG------CGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 182770 0.66 0.980171
Target:  5'- gCGAAGuCCCGggGGACGAgGUGCguucGGcGGGg -3'
miRNA:   3'- -GCUUC-GGGU--UCUGUUgCGCG----CCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 187432 0.66 0.980171
Target:  5'- gGGAGUCCAAGAgGGgGCGgGuGAaaagcGGGg -3'
miRNA:   3'- gCUUCGGGUUCUgUUgCGCgC-CU-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.