miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 147716 0.7 0.902018
Target:  5'- uCGAAGCCCucGACGAgGCaGCGGc--- -3'
miRNA:   3'- -GCUUCGGGuuCUGUUgCG-CGCCuucc -5'
10918 5' -53.6 NC_002794.1 + 74541 0.7 0.908174
Target:  5'- gCGGuuGGCCCucGAGGCGcCGCGCGGcuGAGa -3'
miRNA:   3'- -GCU--UCGGG--UUCUGUuGCGCGCC--UUCc -5'
10918 5' -53.6 NC_002794.1 + 10961 0.7 0.908174
Target:  5'- -cGGGCCCGGGcACu-CGCGCGGGAa- -3'
miRNA:   3'- gcUUCGGGUUC-UGuuGCGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 181239 0.69 0.914098
Target:  5'- aCGggGCCgGAGACGGgGC-CGGGcacGGa -3'
miRNA:   3'- -GCuuCGGgUUCUGUUgCGcGCCUu--CC- -5'
10918 5' -53.6 NC_002794.1 + 46252 0.69 0.919231
Target:  5'- aGGAGCCCccgacgGGGACGugggacgcgcgauACGCGUGGAugcGGu -3'
miRNA:   3'- gCUUCGGG------UUCUGU-------------UGCGCGCCUu--CC- -5'
10918 5' -53.6 NC_002794.1 + 193604 0.69 0.919231
Target:  5'- gGAAGUCCGAGGCGAC-CGCcggcccuuauacgGGAgccGGGg -3'
miRNA:   3'- gCUUCGGGUUCUGUUGcGCG-------------CCU---UCC- -5'
10918 5' -53.6 NC_002794.1 + 194991 0.69 0.91979
Target:  5'- ---cGCCCGcgAGGCGgucggcguGCGCGCGGGccGGGu -3'
miRNA:   3'- gcuuCGGGU--UCUGU--------UGCGCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 84363 0.69 0.91979
Target:  5'- uCGAGGgCCAGGACGAgaGaC-CGGAGGGa -3'
miRNA:   3'- -GCUUCgGGUUCUGUUg-C-GcGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 172629 0.69 0.925248
Target:  5'- uGAAGCCCGGGGCGuugcCGUGCGa---- -3'
miRNA:   3'- gCUUCGGGUUCUGUu---GCGCGCcuucc -5'
10918 5' -53.6 NC_002794.1 + 8365 0.69 0.925248
Target:  5'- aCGAGGCCgCGcAGGCGgccaggGCGCccGCGGAGGa -3'
miRNA:   3'- -GCUUCGG-GU-UCUGU------UGCG--CGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 126123 0.69 0.925248
Target:  5'- cCGGAGCgCCAcggccGGCGACGCcGCGGGGa- -3'
miRNA:   3'- -GCUUCG-GGUu----CUGUUGCG-CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 56475 0.69 0.925248
Target:  5'- aGguGCCCAAGACGGgcuugaccagguCGUGCGcGAAGa -3'
miRNA:   3'- gCuuCGGGUUCUGUU------------GCGCGC-CUUCc -5'
10918 5' -53.6 NC_002794.1 + 195618 0.69 0.935461
Target:  5'- aCGAAaCCCAccccGGACugccgccgcGCGCGCGGAcgcgAGGa -3'
miRNA:   3'- -GCUUcGGGU----UCUGu--------UGCGCGCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 68177 0.69 0.935461
Target:  5'- -cGAGCCCGgucgGGGCGACGUggGUGGGacAGGa -3'
miRNA:   3'- gcUUCGGGU----UCUGUUGCG--CGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 113371 0.69 0.935461
Target:  5'- gCGAcgcGGCCCGccGCGACGCGCGaGAc-- -3'
miRNA:   3'- -GCU---UCGGGUucUGUUGCGCGC-CUucc -5'
10918 5' -53.6 NC_002794.1 + 14809 0.69 0.935461
Target:  5'- aCGAAGCUCGucucGGAgAACGCGggucCGGGcAGGg -3'
miRNA:   3'- -GCUUCGGGU----UCUgUUGCGC----GCCU-UCC- -5'
10918 5' -53.6 NC_002794.1 + 78216 0.69 0.940216
Target:  5'- gCGcGGCCCcGGACGaagagcgccACGCGCGGcGGc -3'
miRNA:   3'- -GCuUCGGGuUCUGU---------UGCGCGCCuUCc -5'
10918 5' -53.6 NC_002794.1 + 133376 0.69 0.940216
Target:  5'- uCGAcgAGCgCGAGugGACG-GCGGgcGGc -3'
miRNA:   3'- -GCU--UCGgGUUCugUUGCgCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 81296 0.68 0.94474
Target:  5'- ---cGgCCAGGcGCAGCGUcaGCGGAGGGu -3'
miRNA:   3'- gcuuCgGGUUC-UGUUGCG--CGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 46037 0.68 0.94474
Target:  5'- uCGggGaCCCGAGG--ACGgGCGGGgacgAGGa -3'
miRNA:   3'- -GCuuC-GGGUUCUguUGCgCGCCU----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.