Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10918 | 5' | -53.6 | NC_002794.1 | + | 176373 | 0.68 | 0.94474 |
Target: 5'- gGucGCCCGcaccGACGACG-GCGGAGGu -3' miRNA: 3'- gCuuCGGGUu---CUGUUGCgCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 79828 | 0.68 | 0.94474 |
Target: 5'- gCGggGaCCgGAGAgGAgaGCGCaGGggGGa -3' miRNA: 3'- -GCuuC-GGgUUCUgUUg-CGCG-CCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 57925 | 0.68 | 0.94474 |
Target: 5'- uCGAugAGCUgGAGGCAGCG-GCGGAu-- -3' miRNA: 3'- -GCU--UCGGgUUCUGUUGCgCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 193718 | 0.68 | 0.946485 |
Target: 5'- gGAAGUCCGAGACGAC-CGuCGGccuuauacggcaaccGGGGc -3' miRNA: 3'- gCUUCGGGUUCUGUUGcGC-GCC---------------UUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 193790 | 0.68 | 0.946485 |
Target: 5'- gGAAGUCCGAGACGAcCGC-CGGccuuauacggcgaccGGGGc -3' miRNA: 3'- gCUUCGGGUUCUGUU-GCGcGCC---------------UUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 50381 | 0.68 | 0.953099 |
Target: 5'- cCGAAGgCCGaggaucgcgaGGAUGAgGCGUGcGAAGGg -3' miRNA: 3'- -GCUUCgGGU----------UCUGUUgCGCGC-CUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 145296 | 0.68 | 0.953099 |
Target: 5'- gGAAGCCUGucGACAcgGCGUGCGcGgcGGc -3' miRNA: 3'- gCUUCGGGUu-CUGU--UGCGCGC-CuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 18335 | 0.68 | 0.956941 |
Target: 5'- gCGAGGUgaCAAGGagggGugGCGCGGAAcGGa -3' miRNA: 3'- -GCUUCGg-GUUCUg---UugCGCGCCUU-CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 9172 | 0.68 | 0.956941 |
Target: 5'- ---cGUCCAGGAucaCGACGaCGCGGgcGGu -3' miRNA: 3'- gcuuCGGGUUCU---GUUGC-GCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 56027 | 0.68 | 0.956941 |
Target: 5'- aCGAAGaCCAAGAgGuUGaGCGGGAGGc -3' miRNA: 3'- -GCUUCgGGUUCUgUuGCgCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 64678 | 0.68 | 0.956941 |
Target: 5'- -cGAGCCgGAGACAGCacgGCGcCGGGGcGGc -3' miRNA: 3'- gcUUCGGgUUCUGUUG---CGC-GCCUU-CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 49682 | 0.68 | 0.960562 |
Target: 5'- aGGAGCgcuUCGAGGcCGAgGCGCGGGccuuGGGa -3' miRNA: 3'- gCUUCG---GGUUCU-GUUgCGCGCCU----UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 123341 | 0.68 | 0.960562 |
Target: 5'- cCGAAGUCCAccucgaaguAGACGcgccGCGCGUGGucGc -3' miRNA: 3'- -GCUUCGGGU---------UCUGU----UGCGCGCCuuCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 87701 | 0.68 | 0.960562 |
Target: 5'- gGGAGCgCCGgcgcgaAGACGccgcgACGCGCGGAc-- -3' miRNA: 3'- gCUUCG-GGU------UCUGU-----UGCGCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 193656 | 0.68 | 0.960562 |
Target: 5'- gGAAGUCCGAGACGAC-CGgGGc--- -3' miRNA: 3'- gCUUCGGGUUCUGUUGcGCgCCuucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 60242 | 0.67 | 0.963636 |
Target: 5'- gGAucGGUCgCAGGuugacgucggcgaACAACaGCGCGGAGGGu -3' miRNA: 3'- gCU--UCGG-GUUC-------------UGUUG-CGCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 12805 | 0.67 | 0.963967 |
Target: 5'- aGuAGCCCAGGuCGcuCGCGCuGGAcGGg -3' miRNA: 3'- gCuUCGGGUUCuGUu-GCGCG-CCUuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 87541 | 0.67 | 0.963967 |
Target: 5'- gCGGugGGUCUuGGACGGCgGCGCaGGAGGa -3' miRNA: 3'- -GCU--UCGGGuUCUGUUG-CGCGcCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 56224 | 0.67 | 0.963967 |
Target: 5'- gCGAAGCCCAcGGuGCAGCugGUGUaguacaGGAGGGa -3' miRNA: 3'- -GCUUCGGGU-UC-UGUUG--CGCG------CCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 189370 | 0.67 | 0.963967 |
Target: 5'- uCGAGG-CCGAGAUGACccuCGCGGuGGGu -3' miRNA: 3'- -GCUUCgGGUUCUGUUGc--GCGCCuUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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