miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 88321 0.67 0.967161
Target:  5'- gCGgcGCCgGcGGCGACGacCGCGGuGGGg -3'
miRNA:   3'- -GCuuCGGgUuCUGUUGC--GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 91400 0.67 0.967161
Target:  5'- -cGAGCCC-GGGCGGCGUgugcaggauGCGGgcGGc -3'
miRNA:   3'- gcUUCGGGuUCUGUUGCG---------CGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 52568 0.67 0.97015
Target:  5'- uCGggGUCgggCGGGuGCAGCGCGgCGGGAuGGa -3'
miRNA:   3'- -GCuuCGG---GUUC-UGUUGCGC-GCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 140566 0.67 0.97015
Target:  5'- aCGAGGgCgGcGGCGGCGuCGCGGcGGGc -3'
miRNA:   3'- -GCUUCgGgUuCUGUUGC-GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 107823 0.67 0.97015
Target:  5'- aGAcGGUaaugCUAAGACAguaaacGCGCGCGcGAGGGg -3'
miRNA:   3'- gCU-UCG----GGUUCUGU------UGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 60399 0.67 0.972122
Target:  5'- cCGggGCCCGcggccgacGACGacgccgccgucgacGCGCGCGGGc-- -3'
miRNA:   3'- -GCuuCGGGUu-------CUGU--------------UGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 140470 0.67 0.972938
Target:  5'- cCGAGGCggCCGAGGCGGcCGagGCGGccGAGGc -3'
miRNA:   3'- -GCUUCG--GGUUCUGUU-GCg-CGCC--UUCC- -5'
10918 5' -53.6 NC_002794.1 + 49264 0.67 0.972938
Target:  5'- aCGAAGCUguCGAG-CGACGaagGCGGcGAGGa -3'
miRNA:   3'- -GCUUCGG--GUUCuGUUGCg--CGCC-UUCC- -5'
10918 5' -53.6 NC_002794.1 + 140506 0.67 0.972938
Target:  5'- cCGAGGCggCCGAGGCGGcCGagGCGGccGAGGc -3'
miRNA:   3'- -GCUUCG--GGUUCUGUU-GCg-CGCC--UUCC- -5'
10918 5' -53.6 NC_002794.1 + 82367 0.67 0.975534
Target:  5'- aGGAGCucgcgcgcggCCGAGA--GC-CGCGGAGGGa -3'
miRNA:   3'- gCUUCG----------GGUUCUguUGcGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 140205 0.67 0.975534
Target:  5'- gCGcAGCCCc-GACAugguGCGCGCcuucugcccguGGAAGGc -3'
miRNA:   3'- -GCuUCGGGuuCUGU----UGCGCG-----------CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 100813 0.67 0.975534
Target:  5'- gCGgcGCCCGAGGCGua-CGUGGAAa- -3'
miRNA:   3'- -GCuuCGGGUUCUGUugcGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 191713 0.66 0.977239
Target:  5'- -cGAGCCCcccGGACGACGaggguaggggucguCGCGGuGGGu -3'
miRNA:   3'- gcUUCGGGu--UCUGUUGC--------------GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 148455 0.66 0.977942
Target:  5'- cCGAAGCCgCcgucGGCGccguCGCGCGGAgcgccAGGc -3'
miRNA:   3'- -GCUUCGG-Guu--CUGUu---GCGCGCCU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 139197 0.66 0.977942
Target:  5'- gCGAuguGCUgcuacauauCAAGACGACgGUGgGGGAGGa -3'
miRNA:   3'- -GCUu--CGG---------GUUCUGUUG-CGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 186738 0.66 0.977942
Target:  5'- uGAGGCCgGGcGACGaaccGCGCGCGcGAGa -3'
miRNA:   3'- gCUUCGGgUU-CUGU----UGCGCGCcUUCc -5'
10918 5' -53.6 NC_002794.1 + 49351 0.66 0.977942
Target:  5'- gCGGAGCCCcugcucGGGAC--CGCGaCGGAuccggAGGa -3'
miRNA:   3'- -GCUUCGGG------UUCUGuuGCGC-GCCU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 187432 0.66 0.980171
Target:  5'- gGGAGUCCAAGAgGGgGCGgGuGAaaagcGGGg -3'
miRNA:   3'- gCUUCGGGUUCUgUUgCGCgC-CU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 182770 0.66 0.980171
Target:  5'- gCGAAGuCCCGggGGACGAgGUGCguucGGcGGGg -3'
miRNA:   3'- -GCUUC-GGGU--UCUGUUgCGCG----CCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 42572 0.66 0.980171
Target:  5'- cCGucGCCCGAGACGcagGC-CGgGGAGcGGc -3'
miRNA:   3'- -GCuuCGGGUUCUGU---UGcGCgCCUU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.