Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10918 | 5' | -53.6 | NC_002794.1 | + | 101723 | 0.66 | 0.980171 |
Target: 5'- gGAAgGUCCGAccgcGGCGGCGCuggacgGUGGggGGg -3' miRNA: 3'- gCUU-CGGGUU----CUGUUGCG------CGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 42572 | 0.66 | 0.980171 |
Target: 5'- cCGucGCCCGAGACGcagGC-CGgGGAGcGGc -3' miRNA: 3'- -GCuuCGGGUUCUGU---UGcGCgCCUU-CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 182770 | 0.66 | 0.980171 |
Target: 5'- gCGAAGuCCCGggGGACGAgGUGCguucGGcGGGg -3' miRNA: 3'- -GCUUC-GGGU--UCUGUUgCGCG----CCuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 83328 | 0.66 | 0.980171 |
Target: 5'- gGAGGUCCAAGAagUAGCGguaGCGGGGc- -3' miRNA: 3'- gCUUCGGGUUCU--GUUGCg--CGCCUUcc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 158918 | 0.66 | 0.981628 |
Target: 5'- aGaAAGUCCGcgucgcgcggcggcAGGCAGuCGCGCaGGAGGa -3' miRNA: 3'- gC-UUCGGGU--------------UCUGUU-GCGCGcCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 78579 | 0.66 | 0.981628 |
Target: 5'- gCGAcGCCCugcgcGGACAGCuGCGgcgugucgagcgacUGGAAGGu -3' miRNA: 3'- -GCUuCGGGu----UCUGUUG-CGC--------------GCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 13977 | 0.66 | 0.982228 |
Target: 5'- cCGggGUCgCGaacAGGCGACaGCGCGGGu-- -3' miRNA: 3'- -GCuuCGG-GU---UCUGUUG-CGCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 10476 | 0.66 | 0.982228 |
Target: 5'- gCGAGGCCagccagAAGACgAGgGCGCGGGc-- -3' miRNA: 3'- -GCUUCGGg-----UUCUG-UUgCGCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 94587 | 0.66 | 0.982228 |
Target: 5'- cCGgcGCCgGuGGCGGCgGCG-GGGAGGa -3' miRNA: 3'- -GCuuCGGgUuCUGUUG-CGCgCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 11176 | 0.66 | 0.982228 |
Target: 5'- --cAGUaCCAGGACGcCG-GCGGAGGGu -3' miRNA: 3'- gcuUCG-GGUUCUGUuGCgCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 137801 | 0.66 | 0.982228 |
Target: 5'- uCGGcGGCCCc-GGCGGCG-GCGGGAcGGg -3' miRNA: 3'- -GCU-UCGGGuuCUGUUGCgCGCCUU-CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 17580 | 0.66 | 0.98412 |
Target: 5'- aCGggGUcggUCGAG-CGACGgcucgaCGCGGGAGGc -3' miRNA: 3'- -GCuuCG---GGUUCuGUUGC------GCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 71850 | 0.66 | 0.98412 |
Target: 5'- uGAAGC---GGGCGGC-CGCGGAAGa -3' miRNA: 3'- gCUUCGgguUCUGUUGcGCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 74317 | 0.66 | 0.98412 |
Target: 5'- aCGGAGCCCGGuGACGACGagacgaGCuucGGGa -3' miRNA: 3'- -GCUUCGGGUU-CUGUUGCg-----CGccuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 183060 | 0.66 | 0.98412 |
Target: 5'- aCGAucGGCCCGGGGCc-CGUGCucGAGGu -3' miRNA: 3'- -GCU--UCGGGUUCUGuuGCGCGccUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 91337 | 0.66 | 0.98412 |
Target: 5'- uGAGGCgCGGGugG-CGCG-GGAAGa -3' miRNA: 3'- gCUUCGgGUUCugUuGCGCgCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 171966 | 0.66 | 0.985855 |
Target: 5'- cCGAGGgCCCGGGagccgaguGCAGCaGCGUGGgcGa -3' miRNA: 3'- -GCUUC-GGGUUC--------UGUUG-CGCGCCuuCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 41496 | 0.66 | 0.985855 |
Target: 5'- gCGcGGUCCAGGccGCGGCG-GCGGcGGGc -3' miRNA: 3'- -GCuUCGGGUUC--UGUUGCgCGCCuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 137327 | 0.66 | 0.985855 |
Target: 5'- cCGAGGCCUucGccGCGGCGCGCGcGcugcuGGc -3' miRNA: 3'- -GCUUCGGGuuC--UGUUGCGCGC-Cuu---CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 160715 | 0.66 | 0.985855 |
Target: 5'- aCGggGCagcucgugucgaCCGAGgaGCAcCGCGCGGAGu- -3' miRNA: 3'- -GCuuCG------------GGUUC--UGUuGCGCGCCUUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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