miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 94587 0.66 0.982228
Target:  5'- cCGgcGCCgGuGGCGGCgGCG-GGGAGGa -3'
miRNA:   3'- -GCuuCGGgUuCUGUUG-CGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 10476 0.66 0.982228
Target:  5'- gCGAGGCCagccagAAGACgAGgGCGCGGGc-- -3'
miRNA:   3'- -GCUUCGGg-----UUCUG-UUgCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 13977 0.66 0.982228
Target:  5'- cCGggGUCgCGaacAGGCGACaGCGCGGGu-- -3'
miRNA:   3'- -GCuuCGG-GU---UCUGUUG-CGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 78579 0.66 0.981628
Target:  5'- gCGAcGCCCugcgcGGACAGCuGCGgcgugucgagcgacUGGAAGGu -3'
miRNA:   3'- -GCUuCGGGu----UCUGUUG-CGC--------------GCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 158918 0.66 0.981628
Target:  5'- aGaAAGUCCGcgucgcgcggcggcAGGCAGuCGCGCaGGAGGa -3'
miRNA:   3'- gC-UUCGGGU--------------UCUGUU-GCGCGcCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 83328 0.66 0.980171
Target:  5'- gGAGGUCCAAGAagUAGCGguaGCGGGGc- -3'
miRNA:   3'- gCUUCGGGUUCU--GUUGCg--CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 187432 0.66 0.980171
Target:  5'- gGGAGUCCAAGAgGGgGCGgGuGAaaagcGGGg -3'
miRNA:   3'- gCUUCGGGUUCUgUUgCGCgC-CU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 182770 0.66 0.980171
Target:  5'- gCGAAGuCCCGggGGACGAgGUGCguucGGcGGGg -3'
miRNA:   3'- -GCUUC-GGGU--UCUGUUgCGCG----CCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 42572 0.66 0.980171
Target:  5'- cCGucGCCCGAGACGcagGC-CGgGGAGcGGc -3'
miRNA:   3'- -GCuuCGGGUUCUGU---UGcGCgCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 101723 0.66 0.980171
Target:  5'- gGAAgGUCCGAccgcGGCGGCGCuggacgGUGGggGGg -3'
miRNA:   3'- gCUU-CGGGUU----CUGUUGCG------CGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 65861 0.66 0.980171
Target:  5'- uCGAacGGCCCcGGA--GCGUGCGGGucGGc -3'
miRNA:   3'- -GCU--UCGGGuUCUguUGCGCGCCUu-CC- -5'
10918 5' -53.6 NC_002794.1 + 91426 0.66 0.980171
Target:  5'- --cGGCCC-GGACGcCGcCGCGGgcGGc -3'
miRNA:   3'- gcuUCGGGuUCUGUuGC-GCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 186738 0.66 0.977942
Target:  5'- uGAGGCCgGGcGACGaaccGCGCGCGcGAGa -3'
miRNA:   3'- gCUUCGGgUU-CUGU----UGCGCGCcUUCc -5'
10918 5' -53.6 NC_002794.1 + 49351 0.66 0.977942
Target:  5'- gCGGAGCCCcugcucGGGAC--CGCGaCGGAuccggAGGa -3'
miRNA:   3'- -GCUUCGGG------UUCUGuuGCGC-GCCU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 139197 0.66 0.977942
Target:  5'- gCGAuguGCUgcuacauauCAAGACGACgGUGgGGGAGGa -3'
miRNA:   3'- -GCUu--CGG---------GUUCUGUUG-CGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 148455 0.66 0.977942
Target:  5'- cCGAAGCCgCcgucGGCGccguCGCGCGGAgcgccAGGc -3'
miRNA:   3'- -GCUUCGG-Guu--CUGUu---GCGCGCCU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 191713 0.66 0.977239
Target:  5'- -cGAGCCCcccGGACGACGaggguaggggucguCGCGGuGGGu -3'
miRNA:   3'- gcUUCGGGu--UCUGUUGC--------------GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 140205 0.67 0.975534
Target:  5'- gCGcAGCCCc-GACAugguGCGCGCcuucugcccguGGAAGGc -3'
miRNA:   3'- -GCuUCGGGuuCUGU----UGCGCG-----------CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 82367 0.67 0.975534
Target:  5'- aGGAGCucgcgcgcggCCGAGA--GC-CGCGGAGGGa -3'
miRNA:   3'- gCUUCG----------GGUUCUguUGcGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 100813 0.67 0.975534
Target:  5'- gCGgcGCCCGAGGCGua-CGUGGAAa- -3'
miRNA:   3'- -GCuuCGGGUUCUGUugcGCGCCUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.