miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 49264 0.67 0.972938
Target:  5'- aCGAAGCUguCGAG-CGACGaagGCGGcGAGGa -3'
miRNA:   3'- -GCUUCGG--GUUCuGUUGCg--CGCC-UUCC- -5'
10918 5' -53.6 NC_002794.1 + 140470 0.67 0.972938
Target:  5'- cCGAGGCggCCGAGGCGGcCGagGCGGccGAGGc -3'
miRNA:   3'- -GCUUCG--GGUUCUGUU-GCg-CGCC--UUCC- -5'
10918 5' -53.6 NC_002794.1 + 140506 0.67 0.972938
Target:  5'- cCGAGGCggCCGAGGCGGcCGagGCGGccGAGGc -3'
miRNA:   3'- -GCUUCG--GGUUCUGUU-GCg-CGCC--UUCC- -5'
10918 5' -53.6 NC_002794.1 + 60399 0.67 0.972122
Target:  5'- cCGggGCCCGcggccgacGACGacgccgccgucgacGCGCGCGGGc-- -3'
miRNA:   3'- -GCuuCGGGUu-------CUGU--------------UGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 107823 0.67 0.97015
Target:  5'- aGAcGGUaaugCUAAGACAguaaacGCGCGCGcGAGGGg -3'
miRNA:   3'- gCU-UCG----GGUUCUGU------UGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 52568 0.67 0.97015
Target:  5'- uCGggGUCgggCGGGuGCAGCGCGgCGGGAuGGa -3'
miRNA:   3'- -GCuuCGG---GUUC-UGUUGCGC-GCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 140566 0.67 0.97015
Target:  5'- aCGAGGgCgGcGGCGGCGuCGCGGcGGGc -3'
miRNA:   3'- -GCUUCgGgUuCUGUUGC-GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 91400 0.67 0.967161
Target:  5'- -cGAGCCC-GGGCGGCGUgugcaggauGCGGgcGGc -3'
miRNA:   3'- gcUUCGGGuUCUGUUGCG---------CGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 88321 0.67 0.967161
Target:  5'- gCGgcGCCgGcGGCGACGacCGCGGuGGGg -3'
miRNA:   3'- -GCuuCGGgUuCUGUUGC--GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 12805 0.67 0.963967
Target:  5'- aGuAGCCCAGGuCGcuCGCGCuGGAcGGg -3'
miRNA:   3'- gCuUCGGGUUCuGUu-GCGCG-CCUuCC- -5'
10918 5' -53.6 NC_002794.1 + 87541 0.67 0.963967
Target:  5'- gCGGugGGUCUuGGACGGCgGCGCaGGAGGa -3'
miRNA:   3'- -GCU--UCGGGuUCUGUUG-CGCGcCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 56224 0.67 0.963967
Target:  5'- gCGAAGCCCAcGGuGCAGCugGUGUaguacaGGAGGGa -3'
miRNA:   3'- -GCUUCGGGU-UC-UGUUG--CGCG------CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 189370 0.67 0.963967
Target:  5'- uCGAGG-CCGAGAUGACccuCGCGGuGGGu -3'
miRNA:   3'- -GCUUCgGGUUCUGUUGc--GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 60242 0.67 0.963636
Target:  5'- gGAucGGUCgCAGGuugacgucggcgaACAACaGCGCGGAGGGu -3'
miRNA:   3'- gCU--UCGG-GUUC-------------UGUUG-CGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 49682 0.68 0.960562
Target:  5'- aGGAGCgcuUCGAGGcCGAgGCGCGGGccuuGGGa -3'
miRNA:   3'- gCUUCG---GGUUCU-GUUgCGCGCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 193656 0.68 0.960562
Target:  5'- gGAAGUCCGAGACGAC-CGgGGc--- -3'
miRNA:   3'- gCUUCGGGUUCUGUUGcGCgCCuucc -5'
10918 5' -53.6 NC_002794.1 + 123341 0.68 0.960562
Target:  5'- cCGAAGUCCAccucgaaguAGACGcgccGCGCGUGGucGc -3'
miRNA:   3'- -GCUUCGGGU---------UCUGU----UGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 87701 0.68 0.960562
Target:  5'- gGGAGCgCCGgcgcgaAGACGccgcgACGCGCGGAc-- -3'
miRNA:   3'- gCUUCG-GGU------UCUGU-----UGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 18335 0.68 0.956941
Target:  5'- gCGAGGUgaCAAGGagggGugGCGCGGAAcGGa -3'
miRNA:   3'- -GCUUCGg-GUUCUg---UugCGCGCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 9172 0.68 0.956941
Target:  5'- ---cGUCCAGGAucaCGACGaCGCGGgcGGu -3'
miRNA:   3'- gcuuCGGGUUCU---GUUGC-GCGCCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.