Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10918 | 5' | -53.6 | NC_002794.1 | + | 18335 | 0.68 | 0.956941 |
Target: 5'- gCGAGGUgaCAAGGagggGugGCGCGGAAcGGa -3' miRNA: 3'- -GCUUCGg-GUUCUg---UugCGCGCCUU-CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 56027 | 0.68 | 0.956941 |
Target: 5'- aCGAAGaCCAAGAgGuUGaGCGGGAGGc -3' miRNA: 3'- -GCUUCgGGUUCUgUuGCgCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 50381 | 0.68 | 0.953099 |
Target: 5'- cCGAAGgCCGaggaucgcgaGGAUGAgGCGUGcGAAGGg -3' miRNA: 3'- -GCUUCgGGU----------UCUGUUgCGCGC-CUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 145296 | 0.68 | 0.953099 |
Target: 5'- gGAAGCCUGucGACAcgGCGUGCGcGgcGGc -3' miRNA: 3'- gCUUCGGGUu-CUGU--UGCGCGC-CuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 193718 | 0.68 | 0.946485 |
Target: 5'- gGAAGUCCGAGACGAC-CGuCGGccuuauacggcaaccGGGGc -3' miRNA: 3'- gCUUCGGGUUCUGUUGcGC-GCC---------------UUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 193790 | 0.68 | 0.946485 |
Target: 5'- gGAAGUCCGAGACGAcCGC-CGGccuuauacggcgaccGGGGc -3' miRNA: 3'- gCUUCGGGUUCUGUU-GCGcGCC---------------UUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 57925 | 0.68 | 0.94474 |
Target: 5'- uCGAugAGCUgGAGGCAGCG-GCGGAu-- -3' miRNA: 3'- -GCU--UCGGgUUCUGUUGCgCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 46037 | 0.68 | 0.94474 |
Target: 5'- uCGggGaCCCGAGG--ACGgGCGGGgacgAGGa -3' miRNA: 3'- -GCuuC-GGGUUCUguUGCgCGCCU----UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 81296 | 0.68 | 0.94474 |
Target: 5'- ---cGgCCAGGcGCAGCGUcaGCGGAGGGu -3' miRNA: 3'- gcuuCgGGUUC-UGUUGCG--CGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 176373 | 0.68 | 0.94474 |
Target: 5'- gGucGCCCGcaccGACGACG-GCGGAGGu -3' miRNA: 3'- gCuuCGGGUu---CUGUUGCgCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 79828 | 0.68 | 0.94474 |
Target: 5'- gCGggGaCCgGAGAgGAgaGCGCaGGggGGa -3' miRNA: 3'- -GCuuC-GGgUUCUgUUg-CGCG-CCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 133376 | 0.69 | 0.940216 |
Target: 5'- uCGAcgAGCgCGAGugGACG-GCGGgcGGc -3' miRNA: 3'- -GCU--UCGgGUUCugUUGCgCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 78216 | 0.69 | 0.940216 |
Target: 5'- gCGcGGCCCcGGACGaagagcgccACGCGCGGcGGc -3' miRNA: 3'- -GCuUCGGGuUCUGU---------UGCGCGCCuUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 113371 | 0.69 | 0.935461 |
Target: 5'- gCGAcgcGGCCCGccGCGACGCGCGaGAc-- -3' miRNA: 3'- -GCU---UCGGGUucUGUUGCGCGC-CUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 195618 | 0.69 | 0.935461 |
Target: 5'- aCGAAaCCCAccccGGACugccgccgcGCGCGCGGAcgcgAGGa -3' miRNA: 3'- -GCUUcGGGU----UCUGu--------UGCGCGCCU----UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 68177 | 0.69 | 0.935461 |
Target: 5'- -cGAGCCCGgucgGGGCGACGUggGUGGGacAGGa -3' miRNA: 3'- gcUUCGGGU----UCUGUUGCG--CGCCU--UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 14809 | 0.69 | 0.935461 |
Target: 5'- aCGAAGCUCGucucGGAgAACGCGggucCGGGcAGGg -3' miRNA: 3'- -GCUUCGGGU----UCUgUUGCGC----GCCU-UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 126123 | 0.69 | 0.925248 |
Target: 5'- cCGGAGCgCCAcggccGGCGACGCcGCGGGGa- -3' miRNA: 3'- -GCUUCG-GGUu----CUGUUGCG-CGCCUUcc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 8365 | 0.69 | 0.925248 |
Target: 5'- aCGAGGCCgCGcAGGCGgccaggGCGCccGCGGAGGa -3' miRNA: 3'- -GCUUCGG-GU-UCUGU------UGCG--CGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 56475 | 0.69 | 0.925248 |
Target: 5'- aGguGCCCAAGACGGgcuugaccagguCGUGCGcGAAGa -3' miRNA: 3'- gCuuCGGGUUCUGUU------------GCGCGC-CUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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