miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 737 0.66 0.987441
Target:  5'- ---cGCCCGcGGC-GCGCGCGGGc-- -3'
miRNA:   3'- gcuuCGGGUuCUGuUGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 8365 0.69 0.925248
Target:  5'- aCGAGGCCgCGcAGGCGgccaggGCGCccGCGGAGGa -3'
miRNA:   3'- -GCUUCGG-GU-UCUGU------UGCG--CGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 9022 0.74 0.71838
Target:  5'- aGgcGCCC--GACAGCGCGCGGgcGc -3'
miRNA:   3'- gCuuCGGGuuCUGUUGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 9172 0.68 0.956941
Target:  5'- ---cGUCCAGGAucaCGACGaCGCGGgcGGu -3'
miRNA:   3'- gcuuCGGGUUCU---GUUGC-GCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 10476 0.66 0.982228
Target:  5'- gCGAGGCCagccagAAGACgAGgGCGCGGGc-- -3'
miRNA:   3'- -GCUUCGGg-----UUCUG-UUgCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 10961 0.7 0.908174
Target:  5'- -cGGGCCCGGGcACu-CGCGCGGGAa- -3'
miRNA:   3'- gcUUCGGGUUC-UGuuGCGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 11176 0.66 0.982228
Target:  5'- --cAGUaCCAGGACGcCG-GCGGAGGGu -3'
miRNA:   3'- gcuUCG-GGUUCUGUuGCgCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 11372 0.71 0.860415
Target:  5'- gCGggGCCCcGGACGcccggGCGgCGCGGGc-- -3'
miRNA:   3'- -GCuuCGGGuUCUGU-----UGC-GCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 12527 0.73 0.784911
Target:  5'- aCGucGCCCAGGuucagcacguACAGCGCGcCGGAccccAGGu -3'
miRNA:   3'- -GCuuCGGGUUC----------UGUUGCGC-GCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 12805 0.67 0.963967
Target:  5'- aGuAGCCCAGGuCGcuCGCGCuGGAcGGg -3'
miRNA:   3'- gCuUCGGGUUCuGUu-GCGCG-CCUuCC- -5'
10918 5' -53.6 NC_002794.1 + 13977 0.66 0.982228
Target:  5'- cCGggGUCgCGaacAGGCGACaGCGCGGGu-- -3'
miRNA:   3'- -GCuuCGG-GU---UCUGUUG-CGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 14809 0.69 0.935461
Target:  5'- aCGAAGCUCGucucGGAgAACGCGggucCGGGcAGGg -3'
miRNA:   3'- -GCUUCGGGU----UCUgUUGCGC----GCCU-UCC- -5'
10918 5' -53.6 NC_002794.1 + 15530 0.66 0.986507
Target:  5'- uGAAGCCCAGGAUGaucacgagcaucgccACGCagaggacgaccgGCGcGAGGa -3'
miRNA:   3'- gCUUCGGGUUCUGU---------------UGCG------------CGCcUUCC- -5'
10918 5' -53.6 NC_002794.1 + 15946 0.71 0.872989
Target:  5'- cCGGAGCggcuccgacgguuuCgAAGACGACGuCGCGGGccGGGg -3'
miRNA:   3'- -GCUUCG--------------GgUUCUGUUGC-GCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 17580 0.66 0.98412
Target:  5'- aCGggGUcggUCGAG-CGACGgcucgaCGCGGGAGGc -3'
miRNA:   3'- -GCuuCG---GGUUCuGUUGC------GCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 18335 0.68 0.956941
Target:  5'- gCGAGGUgaCAAGGagggGugGCGCGGAAcGGa -3'
miRNA:   3'- -GCUUCGg-GUUCUg---UugCGCGCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 37715 0.66 0.987441
Target:  5'- --cAGCUCGcGGCGACGaGgGGAAGGu -3'
miRNA:   3'- gcuUCGGGUuCUGUUGCgCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 41496 0.66 0.985855
Target:  5'- gCGcGGUCCAGGccGCGGCG-GCGGcGGGc -3'
miRNA:   3'- -GCuUCGGGUUC--UGUUGCgCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 42572 0.66 0.980171
Target:  5'- cCGucGCCCGAGACGcagGC-CGgGGAGcGGc -3'
miRNA:   3'- -GCuuCGGGUUCUGU---UGcGCgCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 46037 0.68 0.94474
Target:  5'- uCGggGaCCCGAGG--ACGgGCGGGgacgAGGa -3'
miRNA:   3'- -GCuuC-GGGUUCUguUGCgCGCCU----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.