miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 46252 0.69 0.919231
Target:  5'- aGGAGCCCccgacgGGGACGugggacgcgcgauACGCGUGGAugcGGu -3'
miRNA:   3'- gCUUCGGG------UUCUGU-------------UGCGCGCCUu--CC- -5'
10918 5' -53.6 NC_002794.1 + 47723 0.75 0.667497
Target:  5'- gCGggGCCgcCGGGGCGAgggcgguCGCGaCGGAAGGa -3'
miRNA:   3'- -GCuuCGG--GUUCUGUU-------GCGC-GCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 49264 0.67 0.972938
Target:  5'- aCGAAGCUguCGAG-CGACGaagGCGGcGAGGa -3'
miRNA:   3'- -GCUUCGG--GUUCuGUUGCg--CGCC-UUCC- -5'
10918 5' -53.6 NC_002794.1 + 49351 0.66 0.977942
Target:  5'- gCGGAGCCCcugcucGGGAC--CGCGaCGGAuccggAGGa -3'
miRNA:   3'- -GCUUCGGG------UUCUGuuGCGC-GCCU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 49682 0.68 0.960562
Target:  5'- aGGAGCgcuUCGAGGcCGAgGCGCGGGccuuGGGa -3'
miRNA:   3'- gCUUCG---GGUUCU-GUUgCGCGCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 50381 0.68 0.953099
Target:  5'- cCGAAGgCCGaggaucgcgaGGAUGAgGCGUGcGAAGGg -3'
miRNA:   3'- -GCUUCgGGU----------UCUGUUgCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 52568 0.67 0.97015
Target:  5'- uCGggGUCgggCGGGuGCAGCGCGgCGGGAuGGa -3'
miRNA:   3'- -GCuuCGG---GUUC-UGUUGCGC-GCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 53504 0.72 0.811582
Target:  5'- gGAGGCggCgGAGGCGGCGgagGCGGAGGGa -3'
miRNA:   3'- gCUUCG--GgUUCUGUUGCg--CGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 56027 0.68 0.956941
Target:  5'- aCGAAGaCCAAGAgGuUGaGCGGGAGGc -3'
miRNA:   3'- -GCUUCgGGUUCUgUuGCgCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 56224 0.67 0.963967
Target:  5'- gCGAAGCCCAcGGuGCAGCugGUGUaguacaGGAGGGa -3'
miRNA:   3'- -GCUUCGGGU-UC-UGUUG--CGCG------CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 56475 0.69 0.925248
Target:  5'- aGguGCCCAAGACGGgcuugaccagguCGUGCGcGAAGa -3'
miRNA:   3'- gCuuCGGGUUCUGUU------------GCGCGC-CUUCc -5'
10918 5' -53.6 NC_002794.1 + 57103 0.7 0.902018
Target:  5'- cCGggGgCCGAGucGCGGCGgucgGUGGAGGGg -3'
miRNA:   3'- -GCuuCgGGUUC--UGUUGCg---CGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 57925 0.68 0.94474
Target:  5'- uCGAugAGCUgGAGGCAGCG-GCGGAu-- -3'
miRNA:   3'- -GCU--UCGGgUUCUGUUGCgCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 58236 0.7 0.902018
Target:  5'- gCGguGCCCAcGACGACGUccugGCGGGcgccGGGc -3'
miRNA:   3'- -GCuuCGGGUuCUGUUGCG----CGCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 59785 0.7 0.882194
Target:  5'- gCGAAGCgCAua--AACGCGgGGGAGGc -3'
miRNA:   3'- -GCUUCGgGUucugUUGCGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 60242 0.67 0.963636
Target:  5'- gGAucGGUCgCAGGuugacgucggcgaACAACaGCGCGGAGGGu -3'
miRNA:   3'- gCU--UCGG-GUUC-------------UGUUG-CGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 60399 0.67 0.972122
Target:  5'- cCGggGCCCGcggccgacGACGacgccgccgucgacGCGCGCGGGc-- -3'
miRNA:   3'- -GCuuCGGGUu-------CUGU--------------UGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 61714 0.66 0.986507
Target:  5'- gGAAGCUCGGuccguguugcuggccGugGcCGCGCGGAuGGc -3'
miRNA:   3'- gCUUCGGGUU---------------CugUuGCGCGCCUuCC- -5'
10918 5' -53.6 NC_002794.1 + 64678 0.68 0.956941
Target:  5'- -cGAGCCgGAGACAGCacgGCGcCGGGGcGGc -3'
miRNA:   3'- gcUUCGGgUUCUGUUG---CGC-GCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 65861 0.66 0.980171
Target:  5'- uCGAacGGCCCcGGA--GCGUGCGGGucGGc -3'
miRNA:   3'- -GCU--UCGGGuUCUguUGCGCGCCUu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.