miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 67400 0.82 0.307081
Target:  5'- cCGGAGCCCAGGACGACcggucaccggGuCGCGGAccGGGg -3'
miRNA:   3'- -GCUUCGGGUUCUGUUG----------C-GCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 67780 0.71 0.867146
Target:  5'- cCGAauGGCCCGAGuCGGCGaCGgGGAgcucgacGGGg -3'
miRNA:   3'- -GCU--UCGGGUUCuGUUGC-GCgCCU-------UCC- -5'
10918 5' -53.6 NC_002794.1 + 68177 0.69 0.935461
Target:  5'- -cGAGCCCGgucgGGGCGACGUggGUGGGacAGGa -3'
miRNA:   3'- gcUUCGGGU----UCUGUUGCG--CGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 69473 0.71 0.875146
Target:  5'- cCGggGCCUgcgcGGCGGCGUGCGcGgcGGu -3'
miRNA:   3'- -GCuuCGGGuu--CUGUUGCGCGC-CuuCC- -5'
10918 5' -53.6 NC_002794.1 + 71698 0.86 0.185926
Target:  5'- gCGggGCCCGGGAgAGCGuCGgGGAGGGg -3'
miRNA:   3'- -GCuuCGGGUUCUgUUGC-GCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 71850 0.66 0.98412
Target:  5'- uGAAGC---GGGCGGC-CGCGGAAGa -3'
miRNA:   3'- gCUUCGgguUCUGUUGcGCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 74317 0.66 0.98412
Target:  5'- aCGGAGCCCGGuGACGACGagacgaGCuucGGGa -3'
miRNA:   3'- -GCUUCGGGUU-CUGUUGCg-----CGccuUCC- -5'
10918 5' -53.6 NC_002794.1 + 74541 0.7 0.908174
Target:  5'- gCGGuuGGCCCucGAGGCGcCGCGCGGcuGAGa -3'
miRNA:   3'- -GCU--UCGGG--UUCUGUuGCGCGCC--UUCc -5'
10918 5' -53.6 NC_002794.1 + 74829 0.74 0.728173
Target:  5'- aGAGGCCgGAGAgCGGCGCGuCGGGcgccgcgaagaAGGa -3'
miRNA:   3'- gCUUCGGgUUCU-GUUGCGC-GCCU-----------UCC- -5'
10918 5' -53.6 NC_002794.1 + 78216 0.69 0.940216
Target:  5'- gCGcGGCCCcGGACGaagagcgccACGCGCGGcGGc -3'
miRNA:   3'- -GCuUCGGGuUCUGU---------UGCGCGCCuUCc -5'
10918 5' -53.6 NC_002794.1 + 78579 0.66 0.981628
Target:  5'- gCGAcGCCCugcgcGGACAGCuGCGgcgugucgagcgacUGGAAGGu -3'
miRNA:   3'- -GCUuCGGGu----UCUGUUG-CGC--------------GCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 79449 0.71 0.867884
Target:  5'- gCGggGCgCGAGcacCAGgGCGCGGGucAGGa -3'
miRNA:   3'- -GCuuCGgGUUCu--GUUgCGCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 79828 0.68 0.94474
Target:  5'- gCGggGaCCgGAGAgGAgaGCGCaGGggGGa -3'
miRNA:   3'- -GCuuC-GGgUUCUgUUg-CGCG-CCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 79989 0.75 0.648293
Target:  5'- aGggGUCCGGGGCGuccggggcguccGCggaGCGCGGggGGu -3'
miRNA:   3'- gCuuCGGGUUCUGU------------UG---CGCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 80599 0.72 0.828579
Target:  5'- uCGggGCUCAggcaGGugAACgGCGUGGAcacGGGg -3'
miRNA:   3'- -GCuuCGGGU----UCugUUG-CGCGCCU---UCC- -5'
10918 5' -53.6 NC_002794.1 + 81296 0.68 0.94474
Target:  5'- ---cGgCCAGGcGCAGCGUcaGCGGAGGGu -3'
miRNA:   3'- gcuuCgGGUUC-UGUUGCG--CGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 82367 0.67 0.975534
Target:  5'- aGGAGCucgcgcgcggCCGAGA--GC-CGCGGAGGGa -3'
miRNA:   3'- gCUUCG----------GGUUCUguUGcGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 83328 0.66 0.980171
Target:  5'- gGAGGUCCAAGAagUAGCGguaGCGGGGc- -3'
miRNA:   3'- gCUUCGGGUUCU--GUUGCg--CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 83752 0.73 0.77574
Target:  5'- aGgcGCggCCGGGACGACgGCGCgGGGAGGu -3'
miRNA:   3'- gCuuCG--GGUUCUGUUG-CGCG-CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 84363 0.69 0.91979
Target:  5'- uCGAGGgCCAGGACGAgaGaC-CGGAGGGa -3'
miRNA:   3'- -GCUUCgGGUUCUGUUg-C-GcGCCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.