Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10918 | 5' | -53.6 | NC_002794.1 | + | 85360 | 0.7 | 0.886999 |
Target: 5'- gCGgcGCCUggagaaagucggucGAGAuCGGCGUGCGGGAGa -3' miRNA: 3'- -GCuuCGGG--------------UUCU-GUUGCGCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 85538 | 0.7 | 0.902018 |
Target: 5'- uCGccGCCgc-GACGcCGCGCGGggGGu -3' miRNA: 3'- -GCuuCGGguuCUGUuGCGCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 87541 | 0.67 | 0.963967 |
Target: 5'- gCGGugGGUCUuGGACGGCgGCGCaGGAGGa -3' miRNA: 3'- -GCU--UCGGGuUCUGUUG-CGCGcCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 87701 | 0.68 | 0.960562 |
Target: 5'- gGGAGCgCCGgcgcgaAGACGccgcgACGCGCGGAc-- -3' miRNA: 3'- gCUUCG-GGU------UCUGU-----UGCGCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 88321 | 0.67 | 0.967161 |
Target: 5'- gCGgcGCCgGcGGCGACGacCGCGGuGGGg -3' miRNA: 3'- -GCuuCGGgUuCUGUUGC--GCGCCuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 88646 | 0.73 | 0.784911 |
Target: 5'- cCGgcGCCgCcGGGCGGCGCGCGacGggGGc -3' miRNA: 3'- -GCuuCGG-GuUCUGUUGCGCGC--CuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 91337 | 0.66 | 0.98412 |
Target: 5'- uGAGGCgCGGGugG-CGCG-GGAAGa -3' miRNA: 3'- gCUUCGgGUUCugUuGCGCgCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 91400 | 0.67 | 0.967161 |
Target: 5'- -cGAGCCC-GGGCGGCGUgugcaggauGCGGgcGGc -3' miRNA: 3'- gcUUCGGGuUCUGUUGCG---------CGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 91426 | 0.66 | 0.980171 |
Target: 5'- --cGGCCC-GGACGcCGcCGCGGgcGGc -3' miRNA: 3'- gcuUCGGGuUCUGUuGC-GCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 93691 | 0.7 | 0.882194 |
Target: 5'- cCGggGCCaucGugG-CGCGCGGcGAGGa -3' miRNA: 3'- -GCuuCGGguuCugUuGCGCGCC-UUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 94587 | 0.66 | 0.982228 |
Target: 5'- cCGgcGCCgGuGGCGGCgGCG-GGGAGGa -3' miRNA: 3'- -GCuuCGGgUuCUGUUG-CGCgCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 97240 | 0.7 | 0.882194 |
Target: 5'- --cAGCCuCAAGAucuuCGugGCGgGGAAGGu -3' miRNA: 3'- gcuUCGG-GUUCU----GUugCGCgCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 99965 | 0.76 | 0.5876 |
Target: 5'- gCGAGGgCgCAcGACGugGUGCGGGAGGu -3' miRNA: 3'- -GCUUCgG-GUuCUGUugCGCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 100081 | 0.7 | 0.902018 |
Target: 5'- aCGgcGgCCGGGGCGagagGCGCGgCGGAGGa -3' miRNA: 3'- -GCuuCgGGUUCUGU----UGCGC-GCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 100813 | 0.67 | 0.975534 |
Target: 5'- gCGgcGCCCGAGGCGua-CGUGGAAa- -3' miRNA: 3'- -GCuuCGGGUUCUGUugcGCGCCUUcc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 101440 | 0.66 | 0.987289 |
Target: 5'- uGggGCgCGcccGACAACcuggaggccuacgGCGCGGAGGa -3' miRNA: 3'- gCuuCGgGUu--CUGUUG-------------CGCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 101723 | 0.66 | 0.980171 |
Target: 5'- gGAAgGUCCGAccgcGGCGGCGCuggacgGUGGggGGg -3' miRNA: 3'- gCUU-CGGGUU----CUGUUGCG------CGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 101826 | 0.72 | 0.811582 |
Target: 5'- cCGGcgGGCCCGAGAgCGGCG-GCGGugcGGGg -3' miRNA: 3'- -GCU--UCGGGUUCU-GUUGCgCGCCu--UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 103615 | 0.71 | 0.875146 |
Target: 5'- aGGAGCCCucGGCGGCGuCGCuGgcGGc -3' miRNA: 3'- gCUUCGGGuuCUGUUGC-GCGcCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 105405 | 0.7 | 0.882194 |
Target: 5'- -cGAGCUuuucggCGAGGCcGCGCGCGGcGGGg -3' miRNA: 3'- gcUUCGG------GUUCUGuUGCGCGCCuUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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