miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 105685 0.82 0.328638
Target:  5'- uGAAGCCUccGAgGACGCGCGGggGc -3'
miRNA:   3'- gCUUCGGGuuCUgUUGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 107823 0.67 0.97015
Target:  5'- aGAcGGUaaugCUAAGACAguaaacGCGCGCGcGAGGGg -3'
miRNA:   3'- gCU-UCG----GGUUCUGU------UGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 113371 0.69 0.935461
Target:  5'- gCGAcgcGGCCCGccGCGACGCGCGaGAc-- -3'
miRNA:   3'- -GCU---UCGGGUucUGUUGCGCGC-CUucc -5'
10918 5' -53.6 NC_002794.1 + 115451 0.7 0.895635
Target:  5'- cCGcGGCCCAGGugG-CGC-CGGgcGGg -3'
miRNA:   3'- -GCuUCGGGUUCugUuGCGcGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 116431 0.66 0.987441
Target:  5'- -aGGGCCCGGcGGCGGCggcggcgaccgGCGCGGAGa- -3'
miRNA:   3'- gcUUCGGGUU-CUGUUG-----------CGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 123341 0.68 0.960562
Target:  5'- cCGAAGUCCAccucgaaguAGACGcgccGCGCGUGGucGc -3'
miRNA:   3'- -GCUUCGGGU---------UCUGU----UGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 124175 0.66 0.987441
Target:  5'- uCGAucAGCUCGccgcGGAaguCGCGCGuGAAGGu -3'
miRNA:   3'- -GCU--UCGGGU----UCUguuGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 125691 0.7 0.881499
Target:  5'- aCGAAGCCCAGGuaccgaugguaccACAugGUggaGCGGAGa- -3'
miRNA:   3'- -GCUUCGGGUUC-------------UGUugCG---CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 126123 0.69 0.925248
Target:  5'- cCGGAGCgCCAcggccGGCGACGCcGCGGGGa- -3'
miRNA:   3'- -GCUUCG-GGUu----CUGUUGCG-CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 133376 0.69 0.940216
Target:  5'- uCGAcgAGCgCGAGugGACG-GCGGgcGGc -3'
miRNA:   3'- -GCU--UCGgGUUCugUUGCgCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 134115 0.71 0.860415
Target:  5'- gGAAGCCCGc-GCGAgGUGUGcGAGGGg -3'
miRNA:   3'- gCUUCGGGUucUGUUgCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 136962 0.66 0.986507
Target:  5'- uCGAGGCCCGcaaccacgggaucucGGACGugcCGCGCcugcacgccauGGAcgAGGa -3'
miRNA:   3'- -GCUUCGGGU---------------UCUGUu--GCGCG-----------CCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 137327 0.66 0.985855
Target:  5'- cCGAGGCCUucGccGCGGCGCGCGcGcugcuGGc -3'
miRNA:   3'- -GCUUCGGGuuC--UGUUGCGCGC-Cuu---CC- -5'
10918 5' -53.6 NC_002794.1 + 137801 0.66 0.982228
Target:  5'- uCGGcGGCCCc-GGCGGCG-GCGGGAcGGg -3'
miRNA:   3'- -GCU-UCGGGuuCUGUUGCgCGCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 139197 0.66 0.977942
Target:  5'- gCGAuguGCUgcuacauauCAAGACGACgGUGgGGGAGGa -3'
miRNA:   3'- -GCUu--CGG---------GUUCUGUUG-CGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 140205 0.67 0.975534
Target:  5'- gCGcAGCCCc-GACAugguGCGCGCcuucugcccguGGAAGGc -3'
miRNA:   3'- -GCuUCGGGuuCUGU----UGCGCG-----------CCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 140470 0.67 0.972938
Target:  5'- cCGAGGCggCCGAGGCGGcCGagGCGGccGAGGc -3'
miRNA:   3'- -GCUUCG--GGUUCUGUU-GCg-CGCC--UUCC- -5'
10918 5' -53.6 NC_002794.1 + 140506 0.67 0.972938
Target:  5'- cCGAGGCggCCGAGGCGGcCGagGCGGccGAGGc -3'
miRNA:   3'- -GCUUCG--GGUUCUGUU-GCg-CGCC--UUCC- -5'
10918 5' -53.6 NC_002794.1 + 140566 0.67 0.97015
Target:  5'- aCGAGGgCgGcGGCGGCGuCGCGGcGGGc -3'
miRNA:   3'- -GCUUCgGgUuCUGUUGC-GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 145296 0.68 0.953099
Target:  5'- gGAAGCCUGucGACAcgGCGUGCGcGgcGGc -3'
miRNA:   3'- gCUUCGGGUu-CUGU--UGCGCGC-CuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.