miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 147716 0.7 0.902018
Target:  5'- uCGAAGCCCucGACGAgGCaGCGGc--- -3'
miRNA:   3'- -GCUUCGGGuuCUGUUgCG-CGCCuucc -5'
10918 5' -53.6 NC_002794.1 + 148455 0.66 0.977942
Target:  5'- cCGAAGCCgCcgucGGCGccguCGCGCGGAgcgccAGGc -3'
miRNA:   3'- -GCUUCGG-Guu--CUGUu---GCGCGCCU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 150133 0.72 0.834365
Target:  5'- --cAGCCCGGGcgucuccacguagcGCAGCGCGCGGcGGa -3'
miRNA:   3'- gcuUCGGGUUC--------------UGUUGCGCGCCuUCc -5'
10918 5' -53.6 NC_002794.1 + 151514 0.66 0.985855
Target:  5'- aCGgcGCCggCGAGACcgagaGCGCGGcGGGc -3'
miRNA:   3'- -GCuuCGG--GUUCUGuug--CGCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 158918 0.66 0.981628
Target:  5'- aGaAAGUCCGcgucgcgcggcggcAGGCAGuCGCGCaGGAGGa -3'
miRNA:   3'- gC-UUCGGGU--------------UCUGUU-GCGCGcCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 160715 0.66 0.985855
Target:  5'- aCGggGCagcucgugucgaCCGAGgaGCAcCGCGCGGAGu- -3'
miRNA:   3'- -GCuuCG------------GGUUC--UGUuGCGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 161134 0.7 0.893675
Target:  5'- aCGAGGCgCGGGcggccgcagagcgcGCGACgGCGCGGuGGGa -3'
miRNA:   3'- -GCUUCGgGUUC--------------UGUUG-CGCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 165784 0.71 0.852743
Target:  5'- gGucGCCCGGucGACGagGCGCGCGGccGGu -3'
miRNA:   3'- gCuuCGGGUU--CUGU--UGCGCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 171966 0.66 0.985855
Target:  5'- cCGAGGgCCCGGGagccgaguGCAGCaGCGUGGgcGa -3'
miRNA:   3'- -GCUUC-GGGUUC--------UGUUG-CGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 172161 0.72 0.811582
Target:  5'- cCGAGGCCCcgAAGcgucccgaACcGCGCGCGGcGGGc -3'
miRNA:   3'- -GCUUCGGG--UUC--------UGuUGCGCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 172629 0.69 0.925248
Target:  5'- uGAAGCCCGGGGCGuugcCGUGCGa---- -3'
miRNA:   3'- gCUUCGGGUUCUGUu---GCGCGCcuucc -5'
10918 5' -53.6 NC_002794.1 + 174366 0.71 0.877991
Target:  5'- uCGGAGCCUccGACcgucuccggcucgagGACGgGCGGAucGGGa -3'
miRNA:   3'- -GCUUCGGGuuCUG---------------UUGCgCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 176373 0.68 0.94474
Target:  5'- gGucGCCCGcaccGACGACG-GCGGAGGu -3'
miRNA:   3'- gCuuCGGGUu---CUGUUGCgCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 181239 0.69 0.914098
Target:  5'- aCGggGCCgGAGACGGgGC-CGGGcacGGa -3'
miRNA:   3'- -GCuuCGGgUUCUGUUgCGcGCCUu--CC- -5'
10918 5' -53.6 NC_002794.1 + 181310 0.76 0.6179
Target:  5'- ---cGCCCccGuCGACGCGCGGGAGGc -3'
miRNA:   3'- gcuuCGGGuuCuGUUGCGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 182770 0.66 0.980171
Target:  5'- gCGAAGuCCCGggGGACGAgGUGCguucGGcGGGg -3'
miRNA:   3'- -GCUUC-GGGU--UCUGUUgCGCG----CCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 183060 0.66 0.98412
Target:  5'- aCGAucGGCCCGGGGCc-CGUGCucGAGGu -3'
miRNA:   3'- -GCU--UCGGGUUCUGuuGCGCGccUUCC- -5'
10918 5' -53.6 NC_002794.1 + 184992 0.74 0.727197
Target:  5'- gGAAGCCgAGcgugaccGACGACGgGCGGgcGGa -3'
miRNA:   3'- gCUUCGGgUU-------CUGUUGCgCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 186738 0.66 0.977942
Target:  5'- uGAGGCCgGGcGACGaaccGCGCGCGcGAGa -3'
miRNA:   3'- gCUUCGGgUU-CUGU----UGCGCGCcUUCc -5'
10918 5' -53.6 NC_002794.1 + 187432 0.66 0.980171
Target:  5'- gGGAGUCCAAGAgGGgGCGgGuGAaaagcGGGg -3'
miRNA:   3'- gCUUCGGGUUCUgUUgCGCgC-CU-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.