miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 195726 0.71 0.844875
Target:  5'- cCGGAGCCCGGGACcGC-CGCaGggGc -3'
miRNA:   3'- -GCUUCGGGUUCUGuUGcGCGcCuuCc -5'
10918 5' -53.6 NC_002794.1 + 195618 0.69 0.935461
Target:  5'- aCGAAaCCCAccccGGACugccgccgcGCGCGCGGAcgcgAGGa -3'
miRNA:   3'- -GCUUcGGGU----UCUGu--------UGCGCGCCU----UCC- -5'
10918 5' -53.6 NC_002794.1 + 194991 0.69 0.91979
Target:  5'- ---cGCCCGcgAGGCGgucggcguGCGCGCGGGccGGGu -3'
miRNA:   3'- gcuuCGGGU--UCUGU--------UGCGCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 193790 0.68 0.946485
Target:  5'- gGAAGUCCGAGACGAcCGC-CGGccuuauacggcgaccGGGGc -3'
miRNA:   3'- gCUUCGGGUUCUGUU-GCGcGCC---------------UUCC- -5'
10918 5' -53.6 NC_002794.1 + 193718 0.68 0.946485
Target:  5'- gGAAGUCCGAGACGAC-CGuCGGccuuauacggcaaccGGGGc -3'
miRNA:   3'- gCUUCGGGUUCUGUUGcGC-GCC---------------UUCC- -5'
10918 5' -53.6 NC_002794.1 + 193656 0.68 0.960562
Target:  5'- gGAAGUCCGAGACGAC-CGgGGc--- -3'
miRNA:   3'- gCUUCGGGUUCUGUUGcGCgCCuucc -5'
10918 5' -53.6 NC_002794.1 + 193604 0.69 0.919231
Target:  5'- gGAAGUCCGAGGCGAC-CGCcggcccuuauacgGGAgccGGGg -3'
miRNA:   3'- gCUUCGGGUUCUGUUGcGCG-------------CCU---UCC- -5'
10918 5' -53.6 NC_002794.1 + 191713 0.66 0.977239
Target:  5'- -cGAGCCCcccGGACGACGaggguaggggucguCGCGGuGGGu -3'
miRNA:   3'- gcUUCGGGu--UCUGUUGC--------------GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 189370 0.67 0.963967
Target:  5'- uCGAGG-CCGAGAUGACccuCGCGGuGGGu -3'
miRNA:   3'- -GCUUCgGGUUCUGUUGc--GCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 187432 0.66 0.980171
Target:  5'- gGGAGUCCAAGAgGGgGCGgGuGAaaagcGGGg -3'
miRNA:   3'- gCUUCGGGUUCUgUUgCGCgC-CU-----UCC- -5'
10918 5' -53.6 NC_002794.1 + 186738 0.66 0.977942
Target:  5'- uGAGGCCgGGcGACGaaccGCGCGCGcGAGa -3'
miRNA:   3'- gCUUCGGgUU-CUGU----UGCGCGCcUUCc -5'
10918 5' -53.6 NC_002794.1 + 184992 0.74 0.727197
Target:  5'- gGAAGCCgAGcgugaccGACGACGgGCGGgcGGa -3'
miRNA:   3'- gCUUCGGgUU-------CUGUUGCgCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 183060 0.66 0.98412
Target:  5'- aCGAucGGCCCGGGGCc-CGUGCucGAGGu -3'
miRNA:   3'- -GCU--UCGGGUUCUGuuGCGCGccUUCC- -5'
10918 5' -53.6 NC_002794.1 + 182770 0.66 0.980171
Target:  5'- gCGAAGuCCCGggGGACGAgGUGCguucGGcGGGg -3'
miRNA:   3'- -GCUUC-GGGU--UCUGUUgCGCG----CCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 181310 0.76 0.6179
Target:  5'- ---cGCCCccGuCGACGCGCGGGAGGc -3'
miRNA:   3'- gcuuCGGGuuCuGUUGCGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 181239 0.69 0.914098
Target:  5'- aCGggGCCgGAGACGGgGC-CGGGcacGGa -3'
miRNA:   3'- -GCuuCGGgUUCUGUUgCGcGCCUu--CC- -5'
10918 5' -53.6 NC_002794.1 + 176373 0.68 0.94474
Target:  5'- gGucGCCCGcaccGACGACG-GCGGAGGu -3'
miRNA:   3'- gCuuCGGGUu---CUGUUGCgCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 174366 0.71 0.877991
Target:  5'- uCGGAGCCUccGACcgucuccggcucgagGACGgGCGGAucGGGa -3'
miRNA:   3'- -GCUUCGGGuuCUG---------------UUGCgCGCCU--UCC- -5'
10918 5' -53.6 NC_002794.1 + 172629 0.69 0.925248
Target:  5'- uGAAGCCCGGGGCGuugcCGUGCGa---- -3'
miRNA:   3'- gCUUCGGGUUCUGUu---GCGCGCcuucc -5'
10918 5' -53.6 NC_002794.1 + 172161 0.72 0.811582
Target:  5'- cCGAGGCCCcgAAGcgucccgaACcGCGCGCGGcGGGc -3'
miRNA:   3'- -GCUUCGGG--UUC--------UGuUGCGCGCCuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.