miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 126123 0.69 0.925248
Target:  5'- cCGGAGCgCCAcggccGGCGACGCcGCGGGGa- -3'
miRNA:   3'- -GCUUCG-GGUu----CUGUUGCG-CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 125691 0.7 0.881499
Target:  5'- aCGAAGCCCAGGuaccgaugguaccACAugGUggaGCGGAGa- -3'
miRNA:   3'- -GCUUCGGGUUC-------------UGUugCG---CGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 124175 0.66 0.987441
Target:  5'- uCGAucAGCUCGccgcGGAaguCGCGCGuGAAGGu -3'
miRNA:   3'- -GCU--UCGGGU----UCUguuGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 123341 0.68 0.960562
Target:  5'- cCGAAGUCCAccucgaaguAGACGcgccGCGCGUGGucGc -3'
miRNA:   3'- -GCUUCGGGU---------UCUGU----UGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 116431 0.66 0.987441
Target:  5'- -aGGGCCCGGcGGCGGCggcggcgaccgGCGCGGAGa- -3'
miRNA:   3'- gcUUCGGGUU-CUGUUG-----------CGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 115451 0.7 0.895635
Target:  5'- cCGcGGCCCAGGugG-CGC-CGGgcGGg -3'
miRNA:   3'- -GCuUCGGGUUCugUuGCGcGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 113371 0.69 0.935461
Target:  5'- gCGAcgcGGCCCGccGCGACGCGCGaGAc-- -3'
miRNA:   3'- -GCU---UCGGGUucUGUUGCGCGC-CUucc -5'
10918 5' -53.6 NC_002794.1 + 107823 0.67 0.97015
Target:  5'- aGAcGGUaaugCUAAGACAguaaacGCGCGCGcGAGGGg -3'
miRNA:   3'- gCU-UCG----GGUUCUGU------UGCGCGC-CUUCC- -5'
10918 5' -53.6 NC_002794.1 + 105685 0.82 0.328638
Target:  5'- uGAAGCCUccGAgGACGCGCGGggGc -3'
miRNA:   3'- gCUUCGGGuuCUgUUGCGCGCCuuCc -5'
10918 5' -53.6 NC_002794.1 + 105405 0.7 0.882194
Target:  5'- -cGAGCUuuucggCGAGGCcGCGCGCGGcGGGg -3'
miRNA:   3'- gcUUCGG------GUUCUGuUGCGCGCCuUCC- -5'
10918 5' -53.6 NC_002794.1 + 103615 0.71 0.875146
Target:  5'- aGGAGCCCucGGCGGCGuCGCuGgcGGc -3'
miRNA:   3'- gCUUCGGGuuCUGUUGC-GCGcCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 101826 0.72 0.811582
Target:  5'- cCGGcgGGCCCGAGAgCGGCG-GCGGugcGGGg -3'
miRNA:   3'- -GCU--UCGGGUUCU-GUUGCgCGCCu--UCC- -5'
10918 5' -53.6 NC_002794.1 + 101723 0.66 0.980171
Target:  5'- gGAAgGUCCGAccgcGGCGGCGCuggacgGUGGggGGg -3'
miRNA:   3'- gCUU-CGGGUU----CUGUUGCG------CGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 101440 0.66 0.987289
Target:  5'- uGggGCgCGcccGACAACcuggaggccuacgGCGCGGAGGa -3'
miRNA:   3'- gCuuCGgGUu--CUGUUG-------------CGCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 100813 0.67 0.975534
Target:  5'- gCGgcGCCCGAGGCGua-CGUGGAAa- -3'
miRNA:   3'- -GCuuCGGGUUCUGUugcGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 100081 0.7 0.902018
Target:  5'- aCGgcGgCCGGGGCGagagGCGCGgCGGAGGa -3'
miRNA:   3'- -GCuuCgGGUUCUGU----UGCGC-GCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 99965 0.76 0.5876
Target:  5'- gCGAGGgCgCAcGACGugGUGCGGGAGGu -3'
miRNA:   3'- -GCUUCgG-GUuCUGUugCGCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 97240 0.7 0.882194
Target:  5'- --cAGCCuCAAGAucuuCGugGCGgGGAAGGu -3'
miRNA:   3'- gcuUCGG-GUUCU----GUugCGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 94587 0.66 0.982228
Target:  5'- cCGgcGCCgGuGGCGGCgGCG-GGGAGGa -3'
miRNA:   3'- -GCuuCGGgUuCUGUUG-CGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 93691 0.7 0.882194
Target:  5'- cCGggGCCaucGugG-CGCGCGGcGAGGa -3'
miRNA:   3'- -GCuuCGGguuCugUuGCGCGCC-UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.