Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10918 | 5' | -53.6 | NC_002794.1 | + | 91426 | 0.66 | 0.980171 |
Target: 5'- --cGGCCC-GGACGcCGcCGCGGgcGGc -3' miRNA: 3'- gcuUCGGGuUCUGUuGC-GCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 91400 | 0.67 | 0.967161 |
Target: 5'- -cGAGCCC-GGGCGGCGUgugcaggauGCGGgcGGc -3' miRNA: 3'- gcUUCGGGuUCUGUUGCG---------CGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 91337 | 0.66 | 0.98412 |
Target: 5'- uGAGGCgCGGGugG-CGCG-GGAAGa -3' miRNA: 3'- gCUUCGgGUUCugUuGCGCgCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 88646 | 0.73 | 0.784911 |
Target: 5'- cCGgcGCCgCcGGGCGGCGCGCGacGggGGc -3' miRNA: 3'- -GCuuCGG-GuUCUGUUGCGCGC--CuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 88321 | 0.67 | 0.967161 |
Target: 5'- gCGgcGCCgGcGGCGACGacCGCGGuGGGg -3' miRNA: 3'- -GCuuCGGgUuCUGUUGC--GCGCCuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 87701 | 0.68 | 0.960562 |
Target: 5'- gGGAGCgCCGgcgcgaAGACGccgcgACGCGCGGAc-- -3' miRNA: 3'- gCUUCG-GGU------UCUGU-----UGCGCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 87541 | 0.67 | 0.963967 |
Target: 5'- gCGGugGGUCUuGGACGGCgGCGCaGGAGGa -3' miRNA: 3'- -GCU--UCGGGuUCUGUUG-CGCGcCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 85538 | 0.7 | 0.902018 |
Target: 5'- uCGccGCCgc-GACGcCGCGCGGggGGu -3' miRNA: 3'- -GCuuCGGguuCUGUuGCGCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 85360 | 0.7 | 0.886999 |
Target: 5'- gCGgcGCCUggagaaagucggucGAGAuCGGCGUGCGGGAGa -3' miRNA: 3'- -GCuuCGGG--------------UUCU-GUUGCGCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 84363 | 0.69 | 0.91979 |
Target: 5'- uCGAGGgCCAGGACGAgaGaC-CGGAGGGa -3' miRNA: 3'- -GCUUCgGGUUCUGUUg-C-GcGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 83752 | 0.73 | 0.77574 |
Target: 5'- aGgcGCggCCGGGACGACgGCGCgGGGAGGu -3' miRNA: 3'- gCuuCG--GGUUCUGUUG-CGCG-CCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 83328 | 0.66 | 0.980171 |
Target: 5'- gGAGGUCCAAGAagUAGCGguaGCGGGGc- -3' miRNA: 3'- gCUUCGGGUUCU--GUUGCg--CGCCUUcc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 82367 | 0.67 | 0.975534 |
Target: 5'- aGGAGCucgcgcgcggCCGAGA--GC-CGCGGAGGGa -3' miRNA: 3'- gCUUCG----------GGUUCUguUGcGCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 81296 | 0.68 | 0.94474 |
Target: 5'- ---cGgCCAGGcGCAGCGUcaGCGGAGGGu -3' miRNA: 3'- gcuuCgGGUUC-UGUUGCG--CGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 80599 | 0.72 | 0.828579 |
Target: 5'- uCGggGCUCAggcaGGugAACgGCGUGGAcacGGGg -3' miRNA: 3'- -GCuuCGGGU----UCugUUG-CGCGCCU---UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 79989 | 0.75 | 0.648293 |
Target: 5'- aGggGUCCGGGGCGuccggggcguccGCggaGCGCGGggGGu -3' miRNA: 3'- gCuuCGGGUUCUGU------------UG---CGCGCCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 79828 | 0.68 | 0.94474 |
Target: 5'- gCGggGaCCgGAGAgGAgaGCGCaGGggGGa -3' miRNA: 3'- -GCuuC-GGgUUCUgUUg-CGCG-CCuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 79449 | 0.71 | 0.867884 |
Target: 5'- gCGggGCgCGAGcacCAGgGCGCGGGucAGGa -3' miRNA: 3'- -GCuuCGgGUUCu--GUUgCGCGCCU--UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 78579 | 0.66 | 0.981628 |
Target: 5'- gCGAcGCCCugcgcGGACAGCuGCGgcgugucgagcgacUGGAAGGu -3' miRNA: 3'- -GCUuCGGGu----UCUGUUG-CGC--------------GCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 78216 | 0.69 | 0.940216 |
Target: 5'- gCGcGGCCCcGGACGaagagcgccACGCGCGGcGGc -3' miRNA: 3'- -GCuUCGGGuUCUGU---------UGCGCGCCuUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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