Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10918 | 5' | -53.6 | NC_002794.1 | + | 74829 | 0.74 | 0.728173 |
Target: 5'- aGAGGCCgGAGAgCGGCGCGuCGGGcgccgcgaagaAGGa -3' miRNA: 3'- gCUUCGGgUUCU-GUUGCGC-GCCU-----------UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 74541 | 0.7 | 0.908174 |
Target: 5'- gCGGuuGGCCCucGAGGCGcCGCGCGGcuGAGa -3' miRNA: 3'- -GCU--UCGGG--UUCUGUuGCGCGCC--UUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 74317 | 0.66 | 0.98412 |
Target: 5'- aCGGAGCCCGGuGACGACGagacgaGCuucGGGa -3' miRNA: 3'- -GCUUCGGGUU-CUGUUGCg-----CGccuUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 71850 | 0.66 | 0.98412 |
Target: 5'- uGAAGC---GGGCGGC-CGCGGAAGa -3' miRNA: 3'- gCUUCGgguUCUGUUGcGCGCCUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 71698 | 0.86 | 0.185926 |
Target: 5'- gCGggGCCCGGGAgAGCGuCGgGGAGGGg -3' miRNA: 3'- -GCuuCGGGUUCUgUUGC-GCgCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 69473 | 0.71 | 0.875146 |
Target: 5'- cCGggGCCUgcgcGGCGGCGUGCGcGgcGGu -3' miRNA: 3'- -GCuuCGGGuu--CUGUUGCGCGC-CuuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 68177 | 0.69 | 0.935461 |
Target: 5'- -cGAGCCCGgucgGGGCGACGUggGUGGGacAGGa -3' miRNA: 3'- gcUUCGGGU----UCUGUUGCG--CGCCU--UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 67780 | 0.71 | 0.867146 |
Target: 5'- cCGAauGGCCCGAGuCGGCGaCGgGGAgcucgacGGGg -3' miRNA: 3'- -GCU--UCGGGUUCuGUUGC-GCgCCU-------UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 67400 | 0.82 | 0.307081 |
Target: 5'- cCGGAGCCCAGGACGACcggucaccggGuCGCGGAccGGGg -3' miRNA: 3'- -GCUUCGGGUUCUGUUG----------C-GCGCCU--UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 65861 | 0.66 | 0.980171 |
Target: 5'- uCGAacGGCCCcGGA--GCGUGCGGGucGGc -3' miRNA: 3'- -GCU--UCGGGuUCUguUGCGCGCCUu-CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 64678 | 0.68 | 0.956941 |
Target: 5'- -cGAGCCgGAGACAGCacgGCGcCGGGGcGGc -3' miRNA: 3'- gcUUCGGgUUCUGUUG---CGC-GCCUU-CC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 61714 | 0.66 | 0.986507 |
Target: 5'- gGAAGCUCGGuccguguugcuggccGugGcCGCGCGGAuGGc -3' miRNA: 3'- gCUUCGGGUU---------------CugUuGCGCGCCUuCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 60399 | 0.67 | 0.972122 |
Target: 5'- cCGggGCCCGcggccgacGACGacgccgccgucgacGCGCGCGGGc-- -3' miRNA: 3'- -GCuuCGGGUu-------CUGU--------------UGCGCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 60242 | 0.67 | 0.963636 |
Target: 5'- gGAucGGUCgCAGGuugacgucggcgaACAACaGCGCGGAGGGu -3' miRNA: 3'- gCU--UCGG-GUUC-------------UGUUG-CGCGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 59785 | 0.7 | 0.882194 |
Target: 5'- gCGAAGCgCAua--AACGCGgGGGAGGc -3' miRNA: 3'- -GCUUCGgGUucugUUGCGCgCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 58236 | 0.7 | 0.902018 |
Target: 5'- gCGguGCCCAcGACGACGUccugGCGGGcgccGGGc -3' miRNA: 3'- -GCuuCGGGUuCUGUUGCG----CGCCU----UCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 57925 | 0.68 | 0.94474 |
Target: 5'- uCGAugAGCUgGAGGCAGCG-GCGGAu-- -3' miRNA: 3'- -GCU--UCGGgUUCUGUUGCgCGCCUucc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 57103 | 0.7 | 0.902018 |
Target: 5'- cCGggGgCCGAGucGCGGCGgucgGUGGAGGGg -3' miRNA: 3'- -GCuuCgGGUUC--UGUUGCg---CGCCUUCC- -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 56475 | 0.69 | 0.925248 |
Target: 5'- aGguGCCCAAGACGGgcuugaccagguCGUGCGcGAAGa -3' miRNA: 3'- gCuuCGGGUUCUGUU------------GCGCGC-CUUCc -5' |
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10918 | 5' | -53.6 | NC_002794.1 | + | 56224 | 0.67 | 0.963967 |
Target: 5'- gCGAAGCCCAcGGuGCAGCugGUGUaguacaGGAGGGa -3' miRNA: 3'- -GCUUCGGGU-UC-UGUUG--CGCG------CCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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