miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 5' -53.6 NC_002794.1 + 61714 0.66 0.986507
Target:  5'- gGAAGCUCGGuccguguugcuggccGugGcCGCGCGGAuGGc -3'
miRNA:   3'- gCUUCGGGUU---------------CugUuGCGCGCCUuCC- -5'
10918 5' -53.6 NC_002794.1 + 101440 0.66 0.987289
Target:  5'- uGggGCgCGcccGACAACcuggaggccuacgGCGCGGAGGa -3'
miRNA:   3'- gCuuCGgGUu--CUGUUG-------------CGCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 116431 0.66 0.987441
Target:  5'- -aGGGCCCGGcGGCGGCggcggcgaccgGCGCGGAGa- -3'
miRNA:   3'- gcUUCGGGUU-CUGUUG-----------CGCGCCUUcc -5'
10918 5' -53.6 NC_002794.1 + 37715 0.66 0.987441
Target:  5'- --cAGCUCGcGGCGACGaGgGGAAGGu -3'
miRNA:   3'- gcuUCGGGUuCUGUUGCgCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 737 0.66 0.987441
Target:  5'- ---cGCCCGcGGC-GCGCGCGGGc-- -3'
miRNA:   3'- gcuuCGGGUuCUGuUGCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 71850 0.66 0.98412
Target:  5'- uGAAGC---GGGCGGC-CGCGGAAGa -3'
miRNA:   3'- gCUUCGgguUCUGUUGcGCGCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 91337 0.66 0.98412
Target:  5'- uGAGGCgCGGGugG-CGCG-GGAAGa -3'
miRNA:   3'- gCUUCGgGUUCugUuGCGCgCCUUCc -5'
10918 5' -53.6 NC_002794.1 + 42572 0.66 0.980171
Target:  5'- cCGucGCCCGAGACGcagGC-CGgGGAGcGGc -3'
miRNA:   3'- -GCuuCGGGUUCUGU---UGcGCgCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 101723 0.66 0.980171
Target:  5'- gGAAgGUCCGAccgcGGCGGCGCuggacgGUGGggGGg -3'
miRNA:   3'- gCUU-CGGGUU----CUGUUGCG------CGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 65861 0.66 0.980171
Target:  5'- uCGAacGGCCCcGGA--GCGUGCGGGucGGc -3'
miRNA:   3'- -GCU--UCGGGuUCUguUGCGCGCCUu-CC- -5'
10918 5' -53.6 NC_002794.1 + 91426 0.66 0.980171
Target:  5'- --cGGCCC-GGACGcCGcCGCGGgcGGc -3'
miRNA:   3'- gcuUCGGGuUCUGUuGC-GCGCCuuCC- -5'
10918 5' -53.6 NC_002794.1 + 158918 0.66 0.981628
Target:  5'- aGaAAGUCCGcgucgcgcggcggcAGGCAGuCGCGCaGGAGGa -3'
miRNA:   3'- gC-UUCGGGU--------------UCUGUU-GCGCGcCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 137801 0.66 0.982228
Target:  5'- uCGGcGGCCCc-GGCGGCG-GCGGGAcGGg -3'
miRNA:   3'- -GCU-UCGGGuuCUGUUGCgCGCCUU-CC- -5'
10918 5' -53.6 NC_002794.1 + 78579 0.66 0.981628
Target:  5'- gCGAcGCCCugcgcGGACAGCuGCGgcgugucgagcgacUGGAAGGu -3'
miRNA:   3'- -GCUuCGGGu----UCUGUUG-CGC--------------GCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 11176 0.66 0.982228
Target:  5'- --cAGUaCCAGGACGcCG-GCGGAGGGu -3'
miRNA:   3'- gcuUCG-GGUUCUGUuGCgCGCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 94587 0.66 0.982228
Target:  5'- cCGgcGCCgGuGGCGGCgGCG-GGGAGGa -3'
miRNA:   3'- -GCuuCGGgUuCUGUUG-CGCgCCUUCC- -5'
10918 5' -53.6 NC_002794.1 + 10476 0.66 0.982228
Target:  5'- gCGAGGCCagccagAAGACgAGgGCGCGGGc-- -3'
miRNA:   3'- -GCUUCGGg-----UUCUG-UUgCGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 13977 0.66 0.982228
Target:  5'- cCGggGUCgCGaacAGGCGACaGCGCGGGu-- -3'
miRNA:   3'- -GCuuCGG-GU---UCUGUUG-CGCGCCUucc -5'
10918 5' -53.6 NC_002794.1 + 183060 0.66 0.98412
Target:  5'- aCGAucGGCCCGGGGCc-CGUGCucGAGGu -3'
miRNA:   3'- -GCU--UCGGGUUCUGuuGCGCGccUUCC- -5'
10918 5' -53.6 NC_002794.1 + 74317 0.66 0.98412
Target:  5'- aCGGAGCCCGGuGACGACGagacgaGCuucGGGa -3'
miRNA:   3'- -GCUUCGGGUU-CUGUUGCg-----CGccuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.