miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 2437 0.66 0.700291
Target:  5'- cGCCgCCCGucguCCAGCcGUCCGGcACg- -3'
miRNA:   3'- aCGGgGGGCu---GGUCGaCGGGCU-UGac -5'
10919 5' -62.3 NC_002794.1 + 149647 0.66 0.700291
Target:  5'- cGCCgUUCCGGCCAGCUcGUCC-AGCUc -3'
miRNA:   3'- aCGG-GGGGCUGGUCGA-CGGGcUUGAc -5'
10919 5' -62.3 NC_002794.1 + 137508 0.66 0.700291
Target:  5'- cUGCCgCUCGGCCuGGCgccGCCCGA-CUu -3'
miRNA:   3'- -ACGGgGGGCUGG-UCGa--CGGGCUuGAc -5'
10919 5' -62.3 NC_002794.1 + 138811 0.66 0.700291
Target:  5'- cGCUCCUCGACCGcCUGCUCaacCUGg -3'
miRNA:   3'- aCGGGGGGCUGGUcGACGGGcuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 50313 0.66 0.699337
Target:  5'- cGCCCcgagcggCCCGACCGGUUcGCggaCGAGCg- -3'
miRNA:   3'- aCGGG-------GGGCUGGUCGA-CGg--GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 128397 0.66 0.690727
Target:  5'- cGCaCUCgCCGACCAGC-GCgCGA-CUGg -3'
miRNA:   3'- aCG-GGG-GGCUGGUCGaCGgGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 160050 0.66 0.690727
Target:  5'- cGCCCCCgGACCcgguuuccgGGCcgccGCCaCGAACc- -3'
miRNA:   3'- aCGGGGGgCUGG---------UCGa---CGG-GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 176433 0.66 0.690727
Target:  5'- cGCCCUCCuccgcGACCAGgc-CCCGAGCg- -3'
miRNA:   3'- aCGGGGGG-----CUGGUCgacGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 124063 0.66 0.690727
Target:  5'- cGCCCCCCGGCgGGCgcgGCgaGGcCg- -3'
miRNA:   3'- aCGGGGGGCUGgUCGa--CGggCUuGac -5'
10919 5' -62.3 NC_002794.1 + 78325 0.66 0.690727
Target:  5'- cUGCUCCagguugCCGugCAGCaGCUCGAGCc- -3'
miRNA:   3'- -ACGGGG------GGCugGUCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 175885 0.66 0.681119
Target:  5'- gGCCgCCCuuCgGGCUGUCCGucCUGg -3'
miRNA:   3'- aCGGgGGGcuGgUCGACGGGCuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 175522 0.66 0.681119
Target:  5'- cGCUuuCUCCGGCuCAGCcGCUuCGAGCUGg -3'
miRNA:   3'- aCGG--GGGGCUG-GUCGaCGG-GCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 8910 0.66 0.681119
Target:  5'- gGCCCCCgGGCC-GCUGgCCGc---- -3'
miRNA:   3'- aCGGGGGgCUGGuCGACgGGCuugac -5'
10919 5' -62.3 NC_002794.1 + 118559 0.66 0.681119
Target:  5'- cUGCUgCCCGACCGccacgaacGcCUGCCCcugggcaucGAGCUGc -3'
miRNA:   3'- -ACGGgGGGCUGGU--------C-GACGGG---------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 91593 0.66 0.681119
Target:  5'- aGCCgCUCGGCCGGCaccgUGC-CGAACa- -3'
miRNA:   3'- aCGGgGGGCUGGUCG----ACGgGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 74064 0.66 0.681119
Target:  5'- gGCCaCCgCGACCGGCcggcGCCUGccGCUGc -3'
miRNA:   3'- aCGG-GGgGCUGGUCGa---CGGGCu-UGAC- -5'
10919 5' -62.3 NC_002794.1 + 133295 0.66 0.671474
Target:  5'- cGCCCCCCGAcgaacCCAGCgccgccGCCgCcGACg- -3'
miRNA:   3'- aCGGGGGGCU-----GGUCGa-----CGG-GcUUGac -5'
10919 5' -62.3 NC_002794.1 + 109602 0.66 0.671474
Target:  5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109410 0.66 0.671474
Target:  5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 74991 0.66 0.671474
Target:  5'- aGCgCCUCGGCUGG-UGUCCGAACg- -3'
miRNA:   3'- aCGgGGGGCUGGUCgACGGGCUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.