Results 41 - 60 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 131933 | 0.67 | 0.593876 |
Target: 5'- cGCCgCCCGGCCGGCgagucucgaGUCCGAc--- -3' miRNA: 3'- aCGGgGGGCUGGUCGa--------CGGGCUugac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 82334 | 0.67 | 0.613253 |
Target: 5'- aGCUCCgCCGGCuCGGCgucgccgGCCCGGAg-- -3' miRNA: 3'- aCGGGG-GGCUG-GUCGa------CGGGCUUgac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 127616 | 0.67 | 0.622963 |
Target: 5'- aGCgCCCCGACCucccccuccugcAGCUGUUCGAcgaGCa- -3' miRNA: 3'- aCGgGGGGCUGG------------UCGACGGGCU---UGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 134514 | 0.67 | 0.622963 |
Target: 5'- cGCUCCCCGAcguCCAgcucgacgagccGCUGCUCGAcgaGCUc -3' miRNA: 3'- aCGGGGGGCU---GGU------------CGACGGGCU---UGAc -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 133533 | 0.67 | 0.642397 |
Target: 5'- cGCCCCUCG-CUGGCggaGCCCGcGCc- -3' miRNA: 3'- aCGGGGGGCuGGUCGa--CGGGCuUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 68779 | 0.67 | 0.63268 |
Target: 5'- cGCCCgCCgGACCGGCUGga-GAGCg- -3' miRNA: 3'- aCGGG-GGgCUGGUCGACgggCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 164087 | 0.67 | 0.642397 |
Target: 5'- aUGUgCUCCGGggUCAGCgguaGCCCGAACUc -3' miRNA: 3'- -ACGgGGGGCU--GGUCGa---CGGGCUUGAc -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 43685 | 0.67 | 0.63268 |
Target: 5'- cGCCgaCCUGugCAGCUaCCUGAACa- -3' miRNA: 3'- aCGGg-GGGCugGUCGAcGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 157439 | 0.67 | 0.63268 |
Target: 5'- cGCUCgCCGACUccauGGCggcgGgCCGGACUGa -3' miRNA: 3'- aCGGGgGGCUGG----UCGa---CgGGCUUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 99668 | 0.67 | 0.63268 |
Target: 5'- cGCCUgCCGGCCgAGUcccUGCCgGcGCUGg -3' miRNA: 3'- aCGGGgGGCUGG-UCG---ACGGgCuUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 5987 | 0.67 | 0.622963 |
Target: 5'- cGUCgCCgCCGACCGGCccGCUCGGGCc- -3' miRNA: 3'- aCGG-GG-GGCUGGUCGa-CGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 152070 | 0.67 | 0.622963 |
Target: 5'- cGCCCCgcguCCGACCcGCcGCuCCGGGCc- -3' miRNA: 3'- aCGGGG----GGCUGGuCGaCG-GGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 144573 | 0.68 | 0.565015 |
Target: 5'- gGCCCgCCCGaACgGGCagGCUCGAACc- -3' miRNA: 3'- aCGGG-GGGC-UGgUCGa-CGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 102059 | 0.68 | 0.565015 |
Target: 5'- aGUCCCaCGACagCAGCUcgacCCCGAGCUGg -3' miRNA: 3'- aCGGGGgGCUG--GUCGAc---GGGCUUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 72831 | 0.68 | 0.565015 |
Target: 5'- gUGUUCCCCGACaacguCGGCguguacgGCCCGcuGCUGg -3' miRNA: 3'- -ACGGGGGGCUG-----GUCGa------CGGGCu-UGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 146395 | 0.68 | 0.5746 |
Target: 5'- cGCCgCCgUGACCGGCcGCCgCGGGuCUGu -3' miRNA: 3'- aCGG-GGgGCUGGUCGaCGG-GCUU-GAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 83806 | 0.68 | 0.5746 |
Target: 5'- gUGCCCUCCucgggcGCCAGCUGCagCCGAGu-- -3' miRNA: 3'- -ACGGGGGGc-----UGGUCGACG--GGCUUgac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 121830 | 0.68 | 0.584222 |
Target: 5'- cGCCaCCCCGGCCcccgAGC--CCCGAGCc- -3' miRNA: 3'- aCGG-GGGGCUGG----UCGacGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 131665 | 0.68 | 0.584222 |
Target: 5'- cUGCagCCCGACCAGUacagcggGCCCaucGAACUGc -3' miRNA: 3'- -ACGggGGGCUGGUCGa------CGGG---CUUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 77161 | 0.68 | 0.565015 |
Target: 5'- aGCgCCCaggagcgcaugaUGGCCAGCUGCgCGuACUGg -3' miRNA: 3'- aCGgGGG------------GCUGGUCGACGgGCuUGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home