miRNA display CGI


Results 21 - 40 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 109746 0.71 0.395855
Target:  5'- gGCCCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 71992 0.71 0.38549
Target:  5'- gUGCUCgCCGAgcggguCCAGCUgcugcguuccgcccGCCCGAGCUGc -3'
miRNA:   3'- -ACGGGgGGCU------GGUCGA--------------CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 133903 0.71 0.412149
Target:  5'- cGCCCCCgaGGCCAGCgGCCgCcuGCUGc -3'
miRNA:   3'- aCGGGGGg-CUGGUCGaCGG-GcuUGAC- -5'
10919 5' -62.3 NC_002794.1 + 104231 0.7 0.454634
Target:  5'- cGaCCUCCUGcGCCGcCUGUCCGAGCUGa -3'
miRNA:   3'- aC-GGGGGGC-UGGUcGACGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 172254 0.7 0.42045
Target:  5'- cGCCgaCCCGACCccgcgGGC-GCCCGGACg- -3'
miRNA:   3'- aCGGg-GGGCUGG-----UCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 55563 0.69 0.527147
Target:  5'- gGCCUCUCGGCCaaGGcCUGCCgGcGGCUGg -3'
miRNA:   3'- aCGGGGGGCUGG--UC-GACGGgC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 122069 0.69 0.480334
Target:  5'- cUGCUguacccguCCCCGACCAccgccccGCUGCCCcaccacacggugGAGCUGu -3'
miRNA:   3'- -ACGG--------GGGGCUGGU-------CGACGGG------------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 7503 0.69 0.481234
Target:  5'- cGCCCgUCCGGCCGGCggcgGCCgaGGGCg- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGa---CGGg-CUUGac -5'
10919 5' -62.3 NC_002794.1 + 144486 0.69 0.481234
Target:  5'- cGCCCCguCCGGCCGGCgacagGCgcccuCCGGGCUc -3'
miRNA:   3'- aCGGGG--GGCUGGUCGa----CG-----GGCUUGAc -5'
10919 5' -62.3 NC_002794.1 + 12713 0.69 0.49938
Target:  5'- aGCUCCgCGgacacgcgGCCgGGCUGCCCGAGCc- -3'
miRNA:   3'- aCGGGGgGC--------UGG-UCGACGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 84472 0.69 0.472281
Target:  5'- cUGCaCCUCCGGCCAGC-GCUCGGGg-- -3'
miRNA:   3'- -ACG-GGGGGCUGGUCGaCGGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 44283 0.69 0.518753
Target:  5'- cGCCCCCCGGCgGcGCgcgccgccgccgcggGCCCGcgguuccucGGCUGa -3'
miRNA:   3'- aCGGGGGGCUGgU-CGa--------------CGGGC---------UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 52461 0.69 0.508566
Target:  5'- cUGCUgCUCGACCGGCgcgGgCCGGGCg- -3'
miRNA:   3'- -ACGGgGGGCUGGUCGa--CgGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 118900 0.69 0.508566
Target:  5'- cGCCgUCCGGCCGGCccgccgaGCUCGAcCUGg -3'
miRNA:   3'- aCGGgGGGCUGGUCGa------CGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 134713 0.69 0.516895
Target:  5'- cUGCCgCCCGACCccgAGCgcgcgGUCCGGaucggcgGCUGg -3'
miRNA:   3'- -ACGGgGGGCUGG---UCGa----CGGGCU-------UGAC- -5'
10919 5' -62.3 NC_002794.1 + 143242 0.69 0.475852
Target:  5'- cGCCCgCCCGACCgccgccgcgucgaacGGgaGCCgGAGCg- -3'
miRNA:   3'- aCGGG-GGGCUGG---------------UCgaCGGgCUUGac -5'
10919 5' -62.3 NC_002794.1 + 120580 0.68 0.536533
Target:  5'- cGCCCaCCCGGCCGGCcgGCgCCucGCc- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGa-CG-GGcuUGac -5'
10919 5' -62.3 NC_002794.1 + 16662 0.68 0.536533
Target:  5'- gGCaCgCCCCGGCCGGCgGCacgaCGGACg- -3'
miRNA:   3'- aCG-G-GGGGCUGGUCGaCGg---GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 157310 0.68 0.545976
Target:  5'- cGCCUCCCcGCCAGaaGCCCGccGGCg- -3'
miRNA:   3'- aCGGGGGGcUGGUCgaCGGGC--UUGac -5'
10919 5' -62.3 NC_002794.1 + 109337 0.68 0.536533
Target:  5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3'
miRNA:   3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.