Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 72273 | 0.68 | 0.5746 |
Target: 5'- cGCCgCCCGugCAGCgucCCgGAACg- -3' miRNA: 3'- aCGGgGGGCugGUCGac-GGgCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 83806 | 0.68 | 0.5746 |
Target: 5'- gUGCCCUCCucgggcGCCAGCUGCagCCGAGu-- -3' miRNA: 3'- -ACGGGGGGc-----UGGUCGACG--GGCUUgac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 121830 | 0.68 | 0.584222 |
Target: 5'- cGCCaCCCCGGCCcccgAGC--CCCGAGCc- -3' miRNA: 3'- aCGG-GGGGCUGG----UCGacGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 131665 | 0.68 | 0.584222 |
Target: 5'- cUGCagCCCGACCAGUacagcggGCCCaucGAACUGc -3' miRNA: 3'- -ACGggGGGCUGGUCGa------CGGG---CUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 77161 | 0.68 | 0.565015 |
Target: 5'- aGCgCCCaggagcgcaugaUGGCCAGCUGCgCGuACUGg -3' miRNA: 3'- aCGgGGG------------GCUGGUCGACGgGCuUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109337 | 0.68 | 0.536533 |
Target: 5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3' miRNA: 3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 151460 | 0.68 | 0.564058 |
Target: 5'- cGCCCguuccggUCUGACCGGCcgGCgCCGAGCg- -3' miRNA: 3'- aCGGG-------GGGCUGGUCGa-CG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109697 | 0.68 | 0.536533 |
Target: 5'- gGCCaCgCCCGACCGGaUGCcCCGGGCc- -3' miRNA: 3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 16662 | 0.68 | 0.536533 |
Target: 5'- gGCaCgCCCCGGCCGGCgGCacgaCGGACg- -3' miRNA: 3'- aCG-G-GGGGCUGGUCGaCGg---GCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109194 | 0.68 | 0.536533 |
Target: 5'- gGCCCgagCCCGACCGGUUGgaaCGAGCg- -3' miRNA: 3'- aCGGG---GGGCUGGUCGACgg-GCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 164444 | 0.68 | 0.555471 |
Target: 5'- cGCCCgCCgccuucguCGACCAGCUGCUCcacCUGg -3' miRNA: 3'- aCGGG-GG--------GCUGGUCGACGGGcuuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 128040 | 0.68 | 0.555471 |
Target: 5'- aGCCCCCCacguaGACCGGCccgccgucGCCCGGc--- -3' miRNA: 3'- aCGGGGGG-----CUGGUCGa-------CGGGCUugac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 183351 | 0.68 | 0.545976 |
Target: 5'- aGCCgCUCGACCGGCgGCUgggUGGAUUGg -3' miRNA: 3'- aCGGgGGGCUGGUCGaCGG---GCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 120580 | 0.68 | 0.536533 |
Target: 5'- cGCCCaCCCGGCCGGCcgGCgCCucGCc- -3' miRNA: 3'- aCGGG-GGGCUGGUCGa-CG-GGcuUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109505 | 0.68 | 0.536533 |
Target: 5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3' miRNA: 3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 110634 | 0.68 | 0.535592 |
Target: 5'- gGCCCCgcucggcUCGACCAGCUGCCgaccaGAAg-- -3' miRNA: 3'- aCGGGG-------GGCUGGUCGACGGg----CUUgac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 184550 | 0.68 | 0.565015 |
Target: 5'- gGUCUUCgUGGCCAGCgcgaGCCCGAACg- -3' miRNA: 3'- aCGGGGG-GCUGGUCGa---CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 157310 | 0.68 | 0.545976 |
Target: 5'- cGCCUCCCcGCCAGaaGCCCGccGGCg- -3' miRNA: 3'- aCGGGGGGcUGGUCgaCGGGC--UUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 161293 | 0.68 | 0.555471 |
Target: 5'- cGUUCCUCGugUcgauccugcGGCUGCCCGAGUUGg -3' miRNA: 3'- aCGGGGGGCugG---------UCGACGGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 131933 | 0.67 | 0.593876 |
Target: 5'- cGCCgCCCGGCCGGCgagucucgaGUCCGAc--- -3' miRNA: 3'- aCGGgGGGCUGGUCGa--------CGGGCUugac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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