miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 8910 0.66 0.681119
Target:  5'- gGCCCCCgGGCC-GCUGgCCGc---- -3'
miRNA:   3'- aCGGGGGgCUGGuCGACgGGCuugac -5'
10919 5' -62.3 NC_002794.1 + 91593 0.66 0.681119
Target:  5'- aGCCgCUCGGCCGGCaccgUGC-CGAACa- -3'
miRNA:   3'- aCGGgGGGCUGGUCG----ACGgGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 74064 0.66 0.681119
Target:  5'- gGCCaCCgCGACCGGCcggcGCCUGccGCUGc -3'
miRNA:   3'- aCGG-GGgGCUGGUCGa---CGGGCu-UGAC- -5'
10919 5' -62.3 NC_002794.1 + 128397 0.66 0.690727
Target:  5'- cGCaCUCgCCGACCAGC-GCgCGA-CUGg -3'
miRNA:   3'- aCG-GGG-GGCUGGUCGaCGgGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 124063 0.66 0.690727
Target:  5'- cGCCCCCCGGCgGGCgcgGCgaGGcCg- -3'
miRNA:   3'- aCGGGGGGCUGgUCGa--CGggCUuGac -5'
10919 5' -62.3 NC_002794.1 + 78325 0.66 0.690727
Target:  5'- cUGCUCCagguugCCGugCAGCaGCUCGAGCc- -3'
miRNA:   3'- -ACGGGG------GGCugGUCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 50313 0.66 0.699337
Target:  5'- cGCCCcgagcggCCCGACCGGUUcGCggaCGAGCg- -3'
miRNA:   3'- aCGGG-------GGGCUGGUCGA-CGg--GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 137508 0.66 0.700291
Target:  5'- cUGCCgCUCGGCCuGGCgccGCCCGA-CUu -3'
miRNA:   3'- -ACGGgGGGCUGG-UCGa--CGGGCUuGAc -5'
10919 5' -62.3 NC_002794.1 + 109410 0.66 0.671474
Target:  5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 74991 0.66 0.671474
Target:  5'- aGCgCCUCGGCUGG-UGUCCGAACg- -3'
miRNA:   3'- aCGgGGGGCUGGUCgACGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 118559 0.66 0.681119
Target:  5'- cUGCUgCCCGACCGccacgaacGcCUGCCCcugggcaucGAGCUGc -3'
miRNA:   3'- -ACGGgGGGCUGGU--------C-GACGGG---------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 181043 0.66 0.658895
Target:  5'- cGCCCCgCGAUC-GCUaucuuucuccgcgaGCCCGGACc- -3'
miRNA:   3'- aCGGGGgGCUGGuCGA--------------CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 119736 0.66 0.652106
Target:  5'- cGCCCUCUGACC-GC--CCCGcAGCUGu -3'
miRNA:   3'- aCGGGGGGCUGGuCGacGGGC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 187000 0.66 0.659864
Target:  5'- cGaCCCCCugcgaguuccucaCGGCCAGCcGCCUcugucugGAACUGa -3'
miRNA:   3'- aC-GGGGG-------------GCUGGUCGaCGGG-------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 11648 0.66 0.661801
Target:  5'- cGCCCCCgaACCAGCU-CCCGGc--- -3'
miRNA:   3'- aCGGGGGgcUGGUCGAcGGGCUugac -5'
10919 5' -62.3 NC_002794.1 + 148346 0.66 0.661801
Target:  5'- cUGCUCCuuGAacggcaCCGGCUGCCCucGCc- -3'
miRNA:   3'- -ACGGGGggCU------GGUCGACGGGcuUGac -5'
10919 5' -62.3 NC_002794.1 + 78457 0.66 0.660832
Target:  5'- gGCCUCCaccgucgCGACCcGCUGCagGAGCUGc -3'
miRNA:   3'- aCGGGGG-------GCUGGuCGACGggCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 94192 0.66 0.661801
Target:  5'- aGCCCgUCCGaaacGCCGGCggagcgcgaGCCCGAGCc- -3'
miRNA:   3'- aCGGG-GGGC----UGGUCGa--------CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 161032 0.66 0.661801
Target:  5'- -aCCCCCUcGCCGGC-GCCgGAGCg- -3'
miRNA:   3'- acGGGGGGcUGGUCGaCGGgCUUGac -5'
10919 5' -62.3 NC_002794.1 + 171803 0.66 0.670508
Target:  5'- cGCCCgCCCcgGACCAcacccguGC-GCCCGGGCg- -3'
miRNA:   3'- aCGGG-GGG--CUGGU-------CGaCGGGCUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.