miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 118736 0.78 0.145821
Target:  5'- cGCUCCCCgGACCAGCUGgCCGAAg-- -3'
miRNA:   3'- aCGGGGGG-CUGGUCGACgGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 126045 0.75 0.218828
Target:  5'- cGCCgCCgCGACCGGCguccGCCCGGuccGCUGg -3'
miRNA:   3'- aCGGgGG-GCUGGUCGa---CGGGCU---UGAC- -5'
10919 5' -62.3 NC_002794.1 + 15476 0.74 0.268926
Target:  5'- cG-CUgCCGGCCAGCUGCUCGAACg- -3'
miRNA:   3'- aCgGGgGGCUGGUCGACGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 16310 0.74 0.27503
Target:  5'- aGCCCCgCGGUCAGCUGCUCGAAg-- -3'
miRNA:   3'- aCGGGGgGCUGGUCGACGGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 137176 0.73 0.281245
Target:  5'- cGCgCacuaCCG-CCAGCUGCUCGGGCUGg -3'
miRNA:   3'- aCGgGg---GGCuGGUCGACGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 58716 0.73 0.294008
Target:  5'- cGCCCgCCCGGCCGGCcGCCCu----- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGaCGGGcuugac -5'
10919 5' -62.3 NC_002794.1 + 127478 0.73 0.300556
Target:  5'- cGCCCCCCGACCuGCU-CCgCGAcgGCa- -3'
miRNA:   3'- aCGGGGGGCUGGuCGAcGG-GCU--UGac -5'
10919 5' -62.3 NC_002794.1 + 176955 0.73 0.300556
Target:  5'- -cCUCCCCGA-CGGC-GCCCGGACUGg -3'
miRNA:   3'- acGGGGGGCUgGUCGaCGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 144958 0.73 0.307217
Target:  5'- -aCCCgCCGAcuCCAGCUGCCgGAGCUc -3'
miRNA:   3'- acGGGgGGCU--GGUCGACGGgCUUGAc -5'
10919 5' -62.3 NC_002794.1 + 172205 0.73 0.307217
Target:  5'- cGCCCCCCGAgcgaCCGGCggaaagugucCCCGAACa- -3'
miRNA:   3'- aCGGGGGGCU----GGUCGac--------GGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 94381 0.73 0.307217
Target:  5'- cGCCCgCCCGaaacGCCGGCggccgGUCCGAGCg- -3'
miRNA:   3'- aCGGG-GGGC----UGGUCGa----CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 175252 0.73 0.320876
Target:  5'- gUGCCCggcuucgagaugCCCGGcuCCGGCUGCCuCGAcgGCUGg -3'
miRNA:   3'- -ACGGG------------GGGCU--GGUCGACGG-GCU--UGAC- -5'
10919 5' -62.3 NC_002794.1 + 82590 0.72 0.334984
Target:  5'- cGCCCgCUCGGCCAGCU-CCCGcguCUGc -3'
miRNA:   3'- aCGGG-GGGCUGGUCGAcGGGCuu-GAC- -5'
10919 5' -62.3 NC_002794.1 + 177939 0.72 0.349541
Target:  5'- aGCUCaccaCCGGCCGGCUcCCCGAcCUGg -3'
miRNA:   3'- aCGGGg---GGCUGGUCGAcGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 159831 0.72 0.349541
Target:  5'- cGCCgUCCGGcCCGGCcGCCCGAAUa- -3'
miRNA:   3'- aCGGgGGGCU-GGUCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 50526 0.71 0.372208
Target:  5'- gGCgCUCgGGCCcgAGCggGCCCGAGCUGg -3'
miRNA:   3'- aCGgGGGgCUGG--UCGa-CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 45659 0.71 0.372208
Target:  5'- gGCCUCacgaCGAgCGGCUGCugCCGAGCUGc -3'
miRNA:   3'- aCGGGGg---GCUgGUCGACG--GGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 81432 0.71 0.379983
Target:  5'- aGCCCgCgGACCAGCUGCCgcacguCGugguGCUGu -3'
miRNA:   3'- aCGGGgGgCUGGUCGACGG------GCu---UGAC- -5'
10919 5' -62.3 NC_002794.1 + 71992 0.71 0.38549
Target:  5'- gUGCUCgCCGAgcggguCCAGCUgcugcguuccgcccGCCCGAGCUGc -3'
miRNA:   3'- -ACGGGgGGCU------GGUCGA--------------CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 135767 0.71 0.395855
Target:  5'- gUGCUCCaCGGCCAGCUGgCCGu-CUGc -3'
miRNA:   3'- -ACGGGGgGCUGGUCGACgGGCuuGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.