Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 58755 | 0.67 | 0.603555 |
Target: 5'- cGCUCCUuccgCGACCucccGCCCGAACUGu -3' miRNA: 3'- aCGGGGG----GCUGGucgaCGGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 160437 | 0.67 | 0.603555 |
Target: 5'- cGCCCUggaCGACaugcuaaagcuCAGCUGCCUGcGGCUGa -3' miRNA: 3'- aCGGGGg--GCUG-----------GUCGACGGGC-UUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 153939 | 0.67 | 0.603555 |
Target: 5'- aGCCCCUCG-UgGGCcaGCCCGAAgUGc -3' miRNA: 3'- aCGGGGGGCuGgUCGa-CGGGCUUgAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 180639 | 0.67 | 0.603555 |
Target: 5'- cGUCCCCCGuCCgcgGGCUGCCgGucCUc -3' miRNA: 3'- aCGGGGGGCuGG---UCGACGGgCuuGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 115406 | 0.67 | 0.603555 |
Target: 5'- gGCCCgUcggCGGCCcGCUGCCCgucuuccgcgucGAGCUGg -3' miRNA: 3'- aCGGGgG---GCUGGuCGACGGG------------CUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 82334 | 0.67 | 0.613253 |
Target: 5'- aGCUCCgCCGGCuCGGCgucgccgGCCCGGAg-- -3' miRNA: 3'- aCGGGG-GGCUG-GUCGa------CGGGCUUgac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 45058 | 0.67 | 0.613253 |
Target: 5'- gGCCCCgcggcggaCGGCCgAGCcGCUgGAGCUGa -3' miRNA: 3'- aCGGGGg-------GCUGG-UCGaCGGgCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 91444 | 0.67 | 0.613253 |
Target: 5'- gGCCucggCCUCGGCC-GCcgGCCCGGACg- -3' miRNA: 3'- aCGG----GGGGCUGGuCGa-CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 134514 | 0.67 | 0.622963 |
Target: 5'- cGCUCCCCGAcguCCAgcucgacgagccGCUGCUCGAcgaGCUc -3' miRNA: 3'- aCGGGGGGCU---GGU------------CGACGGGCU---UGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 127616 | 0.67 | 0.622963 |
Target: 5'- aGCgCCCCGACCucccccuccugcAGCUGUUCGAcgaGCa- -3' miRNA: 3'- aCGgGGGGCUGG------------UCGACGGGCU---UGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 152070 | 0.67 | 0.622963 |
Target: 5'- cGCCCCgcguCCGACCcGCcGCuCCGGGCc- -3' miRNA: 3'- aCGGGG----GGCUGGuCGaCG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 5987 | 0.67 | 0.622963 |
Target: 5'- cGUCgCCgCCGACCGGCccGCUCGGGCc- -3' miRNA: 3'- aCGG-GG-GGCUGGUCGa-CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 99668 | 0.67 | 0.63268 |
Target: 5'- cGCCUgCCGGCCgAGUcccUGCCgGcGCUGg -3' miRNA: 3'- aCGGGgGGCUGG-UCG---ACGGgCuUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 157439 | 0.67 | 0.63268 |
Target: 5'- cGCUCgCCGACUccauGGCggcgGgCCGGACUGa -3' miRNA: 3'- aCGGGgGGCUGG----UCGa---CgGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 43685 | 0.67 | 0.63268 |
Target: 5'- cGCCgaCCUGugCAGCUaCCUGAACa- -3' miRNA: 3'- aCGGg-GGGCugGUCGAcGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 68779 | 0.67 | 0.63268 |
Target: 5'- cGCCCgCCgGACCGGCUGga-GAGCg- -3' miRNA: 3'- aCGGG-GGgCUGGUCGACgggCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 133533 | 0.67 | 0.642397 |
Target: 5'- cGCCCCUCG-CUGGCggaGCCCGcGCc- -3' miRNA: 3'- aCGGGGGGCuGGUCGa--CGGGCuUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 164087 | 0.67 | 0.642397 |
Target: 5'- aUGUgCUCCGGggUCAGCgguaGCCCGAACUc -3' miRNA: 3'- -ACGgGGGGCU--GGUCGa---CGGGCUUGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 4220 | 0.66 | 0.652106 |
Target: 5'- cGCCUCgCCGuCCAGCaGCCCGccggggGACg- -3' miRNA: 3'- aCGGGG-GGCuGGUCGaCGGGC------UUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 119736 | 0.66 | 0.652106 |
Target: 5'- cGCCCUCUGACC-GC--CCCGcAGCUGu -3' miRNA: 3'- aCGGGGGGCUGGuCGacGGGC-UUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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