Results 21 - 40 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 109242 | 0.66 | 0.671474 |
Target: 5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3' miRNA: 3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 171803 | 0.66 | 0.670508 |
Target: 5'- cGCCCgCCCcgGACCAcacccguGC-GCCCGGGCg- -3' miRNA: 3'- aCGGG-GGG--CUGGU-------CGaCGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 11648 | 0.66 | 0.661801 |
Target: 5'- cGCCCCCgaACCAGCU-CCCGGc--- -3' miRNA: 3'- aCGGGGGgcUGGUCGAcGGGCUugac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 148346 | 0.66 | 0.661801 |
Target: 5'- cUGCUCCuuGAacggcaCCGGCUGCCCucGCc- -3' miRNA: 3'- -ACGGGGggCU------GGUCGACGGGcuUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 94192 | 0.66 | 0.661801 |
Target: 5'- aGCCCgUCCGaaacGCCGGCggagcgcgaGCCCGAGCc- -3' miRNA: 3'- aCGGG-GGGC----UGGUCGa--------CGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 161032 | 0.66 | 0.661801 |
Target: 5'- -aCCCCCUcGCCGGC-GCCgGAGCg- -3' miRNA: 3'- acGGGGGGcUGGUCGaCGGgCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 78457 | 0.66 | 0.660832 |
Target: 5'- gGCCUCCaccgucgCGACCcGCUGCagGAGCUGc -3' miRNA: 3'- aCGGGGG-------GCUGGuCGACGggCUUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 187000 | 0.66 | 0.659864 |
Target: 5'- cGaCCCCCugcgaguuccucaCGGCCAGCcGCCUcugucugGAACUGa -3' miRNA: 3'- aC-GGGGG-------------GCUGGUCGaCGGG-------CUUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 181043 | 0.66 | 0.658895 |
Target: 5'- cGCCCCgCGAUC-GCUaucuuucuccgcgaGCCCGGACc- -3' miRNA: 3'- aCGGGGgGCUGGuCGA--------------CGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 48711 | 0.66 | 0.652106 |
Target: 5'- gGCCCCggggCCGcgaggGCCAGCUGgaCCGA-CUGa -3' miRNA: 3'- aCGGGG----GGC-----UGGUCGACg-GGCUuGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 103932 | 0.66 | 0.652106 |
Target: 5'- gGCCUgCgCGACCAGUccgcaccucaUGUCCGAcCUGg -3' miRNA: 3'- aCGGGgG-GCUGGUCG----------ACGGGCUuGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 4220 | 0.66 | 0.652106 |
Target: 5'- cGCCUCgCCGuCCAGCaGCCCGccggggGACg- -3' miRNA: 3'- aCGGGG-GGCuGGUCGaCGGGC------UUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 119736 | 0.66 | 0.652106 |
Target: 5'- cGCCCUCUGACC-GC--CCCGcAGCUGu -3' miRNA: 3'- aCGGGGGGCUGGuCGacGGGC-UUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 133533 | 0.67 | 0.642397 |
Target: 5'- cGCCCCUCG-CUGGCggaGCCCGcGCc- -3' miRNA: 3'- aCGGGGGGCuGGUCGa--CGGGCuUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 164087 | 0.67 | 0.642397 |
Target: 5'- aUGUgCUCCGGggUCAGCgguaGCCCGAACUc -3' miRNA: 3'- -ACGgGGGGCU--GGUCGa---CGGGCUUGAc -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 99668 | 0.67 | 0.63268 |
Target: 5'- cGCCUgCCGGCCgAGUcccUGCCgGcGCUGg -3' miRNA: 3'- aCGGGgGGCUGG-UCG---ACGGgCuUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 157439 | 0.67 | 0.63268 |
Target: 5'- cGCUCgCCGACUccauGGCggcgGgCCGGACUGa -3' miRNA: 3'- aCGGGgGGCUGG----UCGa---CgGGCUUGAC- -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 43685 | 0.67 | 0.63268 |
Target: 5'- cGCCgaCCUGugCAGCUaCCUGAACa- -3' miRNA: 3'- aCGGg-GGGCugGUCGAcGGGCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 68779 | 0.67 | 0.63268 |
Target: 5'- cGCCCgCCgGACCGGCUGga-GAGCg- -3' miRNA: 3'- aCGGG-GGgCUGGUCGACgggCUUGac -5' |
|||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 152070 | 0.67 | 0.622963 |
Target: 5'- cGCCCCgcguCCGACCcGCcGCuCCGGGCc- -3' miRNA: 3'- aCGGGG----GGCUGGuCGaCG-GGCUUGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home