miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 134514 0.67 0.622963
Target:  5'- cGCUCCCCGAcguCCAgcucgacgagccGCUGCUCGAcgaGCUc -3'
miRNA:   3'- aCGGGGGGCU---GGU------------CGACGGGCU---UGAc -5'
10919 5' -62.3 NC_002794.1 + 152070 0.67 0.622963
Target:  5'- cGCCCCgcguCCGACCcGCcGCuCCGGGCc- -3'
miRNA:   3'- aCGGGG----GGCUGGuCGaCG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 5987 0.67 0.622963
Target:  5'- cGUCgCCgCCGACCGGCccGCUCGGGCc- -3'
miRNA:   3'- aCGG-GG-GGCUGGUCGa-CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 82334 0.67 0.613253
Target:  5'- aGCUCCgCCGGCuCGGCgucgccgGCCCGGAg-- -3'
miRNA:   3'- aCGGGG-GGCUG-GUCGa------CGGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 45058 0.67 0.613253
Target:  5'- gGCCCCgcggcggaCGGCCgAGCcGCUgGAGCUGa -3'
miRNA:   3'- aCGGGGg-------GCUGG-UCGaCGGgCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 91444 0.67 0.613253
Target:  5'- gGCCucggCCUCGGCC-GCcgGCCCGGACg- -3'
miRNA:   3'- aCGG----GGGGCUGGuCGa-CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 115406 0.67 0.603555
Target:  5'- gGCCCgUcggCGGCCcGCUGCCCgucuuccgcgucGAGCUGg -3'
miRNA:   3'- aCGGGgG---GCUGGuCGACGGG------------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 180639 0.67 0.603555
Target:  5'- cGUCCCCCGuCCgcgGGCUGCCgGucCUc -3'
miRNA:   3'- aCGGGGGGCuGG---UCGACGGgCuuGAc -5'
10919 5' -62.3 NC_002794.1 + 153939 0.67 0.603555
Target:  5'- aGCCCCUCG-UgGGCcaGCCCGAAgUGc -3'
miRNA:   3'- aCGGGGGGCuGgUCGa-CGGGCUUgAC- -5'
10919 5' -62.3 NC_002794.1 + 160437 0.67 0.603555
Target:  5'- cGCCCUggaCGACaugcuaaagcuCAGCUGCCUGcGGCUGa -3'
miRNA:   3'- aCGGGGg--GCUG-----------GUCGACGGGC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 58755 0.67 0.603555
Target:  5'- cGCUCCUuccgCGACCucccGCCCGAACUGu -3'
miRNA:   3'- aCGGGGG----GCUGGucgaCGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 131933 0.67 0.593876
Target:  5'- cGCCgCCCGGCCGGCgagucucgaGUCCGAc--- -3'
miRNA:   3'- aCGGgGGGCUGGUCGa--------CGGGCUugac -5'
10919 5' -62.3 NC_002794.1 + 131665 0.68 0.584222
Target:  5'- cUGCagCCCGACCAGUacagcggGCCCaucGAACUGc -3'
miRNA:   3'- -ACGggGGGCUGGUCGa------CGGG---CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 121830 0.68 0.584222
Target:  5'- cGCCaCCCCGGCCcccgAGC--CCCGAGCc- -3'
miRNA:   3'- aCGG-GGGGCUGG----UCGacGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 146395 0.68 0.5746
Target:  5'- cGCCgCCgUGACCGGCcGCCgCGGGuCUGu -3'
miRNA:   3'- aCGG-GGgGCUGGUCGaCGG-GCUU-GAC- -5'
10919 5' -62.3 NC_002794.1 + 83806 0.68 0.5746
Target:  5'- gUGCCCUCCucgggcGCCAGCUGCagCCGAGu-- -3'
miRNA:   3'- -ACGGGGGGc-----UGGUCGACG--GGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 72273 0.68 0.5746
Target:  5'- cGCCgCCCGugCAGCgucCCgGAACg- -3'
miRNA:   3'- aCGGgGGGCugGUCGac-GGgCUUGac -5'
10919 5' -62.3 NC_002794.1 + 102059 0.68 0.565015
Target:  5'- aGUCCCaCGACagCAGCUcgacCCCGAGCUGg -3'
miRNA:   3'- aCGGGGgGCUG--GUCGAc---GGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 144573 0.68 0.565015
Target:  5'- gGCCCgCCCGaACgGGCagGCUCGAACc- -3'
miRNA:   3'- aCGGG-GGGC-UGgUCGa-CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 77161 0.68 0.565015
Target:  5'- aGCgCCCaggagcgcaugaUGGCCAGCUGCgCGuACUGg -3'
miRNA:   3'- aCGgGGG------------GCUGGUCGACGgGCuUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.