miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 77161 0.68 0.565015
Target:  5'- aGCgCCCaggagcgcaugaUGGCCAGCUGCgCGuACUGg -3'
miRNA:   3'- aCGgGGG------------GCUGGUCGACGgGCuUGAC- -5'
10919 5' -62.3 NC_002794.1 + 184550 0.68 0.565015
Target:  5'- gGUCUUCgUGGCCAGCgcgaGCCCGAACg- -3'
miRNA:   3'- aCGGGGG-GCUGGUCGa---CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 151460 0.68 0.564058
Target:  5'- cGCCCguuccggUCUGACCGGCcgGCgCCGAGCg- -3'
miRNA:   3'- aCGGG-------GGGCUGGUCGa-CG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 128040 0.68 0.555471
Target:  5'- aGCCCCCCacguaGACCGGCccgccgucGCCCGGc--- -3'
miRNA:   3'- aCGGGGGG-----CUGGUCGa-------CGGGCUugac -5'
10919 5' -62.3 NC_002794.1 + 161293 0.68 0.555471
Target:  5'- cGUUCCUCGugUcgauccugcGGCUGCCCGAGUUGg -3'
miRNA:   3'- aCGGGGGGCugG---------UCGACGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 164444 0.68 0.555471
Target:  5'- cGCCCgCCgccuucguCGACCAGCUGCUCcacCUGg -3'
miRNA:   3'- aCGGG-GG--------GCUGGUCGACGGGcuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 157310 0.68 0.545976
Target:  5'- cGCCUCCCcGCCAGaaGCCCGccGGCg- -3'
miRNA:   3'- aCGGGGGGcUGGUCgaCGGGC--UUGac -5'
10919 5' -62.3 NC_002794.1 + 183351 0.68 0.545976
Target:  5'- aGCCgCUCGACCGGCgGCUgggUGGAUUGg -3'
miRNA:   3'- aCGGgGGGCUGGUCGaCGG---GCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 109194 0.68 0.536533
Target:  5'- gGCCCgagCCCGACCGGUUGgaaCGAGCg- -3'
miRNA:   3'- aCGGG---GGGCUGGUCGACgg-GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109697 0.68 0.536533
Target:  5'- gGCCaCgCCCGACCGGaUGCcCCGGGCc- -3'
miRNA:   3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109505 0.68 0.536533
Target:  5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3'
miRNA:   3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 120580 0.68 0.536533
Target:  5'- cGCCCaCCCGGCCGGCcgGCgCCucGCc- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGa-CG-GGcuUGac -5'
10919 5' -62.3 NC_002794.1 + 16662 0.68 0.536533
Target:  5'- gGCaCgCCCCGGCCGGCgGCacgaCGGACg- -3'
miRNA:   3'- aCG-G-GGGGCUGGUCGaCGg---GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109337 0.68 0.536533
Target:  5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3'
miRNA:   3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 110634 0.68 0.535592
Target:  5'- gGCCCCgcucggcUCGACCAGCUGCCgaccaGAAg-- -3'
miRNA:   3'- aCGGGG-------GGCUGGUCGACGGg----CUUgac -5'
10919 5' -62.3 NC_002794.1 + 55563 0.69 0.527147
Target:  5'- gGCCUCUCGGCCaaGGcCUGCCgGcGGCUGg -3'
miRNA:   3'- aCGGGGGGCUGG--UC-GACGGgC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 44283 0.69 0.518753
Target:  5'- cGCCCCCCGGCgGcGCgcgccgccgccgcggGCCCGcgguuccucGGCUGa -3'
miRNA:   3'- aCGGGGGGCUGgU-CGa--------------CGGGC---------UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 134713 0.69 0.516895
Target:  5'- cUGCCgCCCGACCccgAGCgcgcgGUCCGGaucggcgGCUGg -3'
miRNA:   3'- -ACGGgGGGCUGG---UCGa----CGGGCU-------UGAC- -5'
10919 5' -62.3 NC_002794.1 + 118900 0.69 0.508566
Target:  5'- cGCCgUCCGGCCGGCccgccgaGCUCGAcCUGg -3'
miRNA:   3'- aCGGgGGGCUGGUCGa------CGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 52461 0.69 0.508566
Target:  5'- cUGCUgCUCGACCGGCgcgGgCCGGGCg- -3'
miRNA:   3'- -ACGGgGGGCUGGUCGa--CgGGCUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.