miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 12713 0.69 0.49938
Target:  5'- aGCUCCgCGgacacgcgGCCgGGCUGCCCGAGCc- -3'
miRNA:   3'- aCGGGGgGC--------UGG-UCGACGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 144486 0.69 0.481234
Target:  5'- cGCCCCguCCGGCCGGCgacagGCgcccuCCGGGCUc -3'
miRNA:   3'- aCGGGG--GGCUGGUCGa----CG-----GGCUUGAc -5'
10919 5' -62.3 NC_002794.1 + 7503 0.69 0.481234
Target:  5'- cGCCCgUCCGGCCGGCggcgGCCgaGGGCg- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGa---CGGg-CUUGac -5'
10919 5' -62.3 NC_002794.1 + 122069 0.69 0.480334
Target:  5'- cUGCUguacccguCCCCGACCAccgccccGCUGCCCcaccacacggugGAGCUGu -3'
miRNA:   3'- -ACGG--------GGGGCUGGU-------CGACGGG------------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 143242 0.69 0.475852
Target:  5'- cGCCCgCCCGACCgccgccgcgucgaacGGgaGCCgGAGCg- -3'
miRNA:   3'- aCGGG-GGGCUGG---------------UCgaCGGgCUUGac -5'
10919 5' -62.3 NC_002794.1 + 84472 0.69 0.472281
Target:  5'- cUGCaCCUCCGGCCAGC-GCUCGGGg-- -3'
miRNA:   3'- -ACG-GGGGGCUGGUCGaCGGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 104231 0.7 0.454634
Target:  5'- cGaCCUCCUGcGCCGcCUGUCCGAGCUGa -3'
miRNA:   3'- aC-GGGGGGC-UGGUcGACGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 172254 0.7 0.42045
Target:  5'- cGCCgaCCCGACCccgcgGGC-GCCCGGACg- -3'
miRNA:   3'- aCGGg-GGGCUGG-----UCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 133903 0.71 0.412149
Target:  5'- cGCCCCCgaGGCCAGCgGCCgCcuGCUGc -3'
miRNA:   3'- aCGGGGGg-CUGGUCGaCGG-GcuUGAC- -5'
10919 5' -62.3 NC_002794.1 + 109746 0.71 0.395855
Target:  5'- gGCCCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 135767 0.71 0.395855
Target:  5'- gUGCUCCaCGGCCAGCUGgCCGu-CUGc -3'
miRNA:   3'- -ACGGGGgGCUGGUCGACgGGCuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 109554 0.71 0.395855
Target:  5'- gGCCCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 71992 0.71 0.38549
Target:  5'- gUGCUCgCCGAgcggguCCAGCUgcugcguuccgcccGCCCGAGCUGc -3'
miRNA:   3'- -ACGGGgGGCU------GGUCGA--------------CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 81432 0.71 0.379983
Target:  5'- aGCCCgCgGACCAGCUGCCgcacguCGugguGCUGu -3'
miRNA:   3'- aCGGGgGgCUGGUCGACGG------GCu---UGAC- -5'
10919 5' -62.3 NC_002794.1 + 45659 0.71 0.372208
Target:  5'- gGCCUCacgaCGAgCGGCUGCugCCGAGCUGc -3'
miRNA:   3'- aCGGGGg---GCUgGUCGACG--GGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 50526 0.71 0.372208
Target:  5'- gGCgCUCgGGCCcgAGCggGCCCGAGCUGg -3'
miRNA:   3'- aCGgGGGgCUGG--UCGa-CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 159831 0.72 0.349541
Target:  5'- cGCCgUCCGGcCCGGCcGCCCGAAUa- -3'
miRNA:   3'- aCGGgGGGCU-GGUCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 177939 0.72 0.349541
Target:  5'- aGCUCaccaCCGGCCGGCUcCCCGAcCUGg -3'
miRNA:   3'- aCGGGg---GGCUGGUCGAcGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 82590 0.72 0.334984
Target:  5'- cGCCCgCUCGGCCAGCU-CCCGcguCUGc -3'
miRNA:   3'- aCGGG-GGGCUGGUCGAcGGGCuu-GAC- -5'
10919 5' -62.3 NC_002794.1 + 175252 0.73 0.320876
Target:  5'- gUGCCCggcuucgagaugCCCGGcuCCGGCUGCCuCGAcgGCUGg -3'
miRNA:   3'- -ACGGG------------GGGCU--GGUCGACGG-GCU--UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.