miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 2437 0.66 0.700291
Target:  5'- cGCCgCCCGucguCCAGCcGUCCGGcACg- -3'
miRNA:   3'- aCGGgGGGCu---GGUCGaCGGGCU-UGac -5'
10919 5' -62.3 NC_002794.1 + 4220 0.66 0.652106
Target:  5'- cGCCUCgCCGuCCAGCaGCCCGccggggGACg- -3'
miRNA:   3'- aCGGGG-GGCuGGUCGaCGGGC------UUGac -5'
10919 5' -62.3 NC_002794.1 + 5987 0.67 0.622963
Target:  5'- cGUCgCCgCCGACCGGCccGCUCGGGCc- -3'
miRNA:   3'- aCGG-GG-GGCUGGUCGa-CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 7503 0.69 0.481234
Target:  5'- cGCCCgUCCGGCCGGCggcgGCCgaGGGCg- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGa---CGGg-CUUGac -5'
10919 5' -62.3 NC_002794.1 + 8910 0.66 0.681119
Target:  5'- gGCCCCCgGGCC-GCUGgCCGc---- -3'
miRNA:   3'- aCGGGGGgCUGGuCGACgGGCuugac -5'
10919 5' -62.3 NC_002794.1 + 11648 0.66 0.661801
Target:  5'- cGCCCCCgaACCAGCU-CCCGGc--- -3'
miRNA:   3'- aCGGGGGgcUGGUCGAcGGGCUugac -5'
10919 5' -62.3 NC_002794.1 + 12713 0.69 0.49938
Target:  5'- aGCUCCgCGgacacgcgGCCgGGCUGCCCGAGCc- -3'
miRNA:   3'- aCGGGGgGC--------UGG-UCGACGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 15476 0.74 0.268926
Target:  5'- cG-CUgCCGGCCAGCUGCUCGAACg- -3'
miRNA:   3'- aCgGGgGGCUGGUCGACGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 16310 0.74 0.27503
Target:  5'- aGCCCCgCGGUCAGCUGCUCGAAg-- -3'
miRNA:   3'- aCGGGGgGCUGGUCGACGGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 16662 0.68 0.536533
Target:  5'- gGCaCgCCCCGGCCGGCgGCacgaCGGACg- -3'
miRNA:   3'- aCG-G-GGGGCUGGUCGaCGg---GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 43685 0.67 0.63268
Target:  5'- cGCCgaCCUGugCAGCUaCCUGAACa- -3'
miRNA:   3'- aCGGg-GGGCugGUCGAcGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 44283 0.69 0.518753
Target:  5'- cGCCCCCCGGCgGcGCgcgccgccgccgcggGCCCGcgguuccucGGCUGa -3'
miRNA:   3'- aCGGGGGGCUGgU-CGa--------------CGGGC---------UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 45058 0.67 0.613253
Target:  5'- gGCCCCgcggcggaCGGCCgAGCcGCUgGAGCUGa -3'
miRNA:   3'- aCGGGGg-------GCUGG-UCGaCGGgCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 45659 0.71 0.372208
Target:  5'- gGCCUCacgaCGAgCGGCUGCugCCGAGCUGc -3'
miRNA:   3'- aCGGGGg---GCUgGUCGACG--GGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 48711 0.66 0.652106
Target:  5'- gGCCCCggggCCGcgaggGCCAGCUGgaCCGA-CUGa -3'
miRNA:   3'- aCGGGG----GGC-----UGGUCGACg-GGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 50313 0.66 0.699337
Target:  5'- cGCCCcgagcggCCCGACCGGUUcGCggaCGAGCg- -3'
miRNA:   3'- aCGGG-------GGGCUGGUCGA-CGg--GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 50526 0.71 0.372208
Target:  5'- gGCgCUCgGGCCcgAGCggGCCCGAGCUGg -3'
miRNA:   3'- aCGgGGGgCUGG--UCGa-CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 52461 0.69 0.508566
Target:  5'- cUGCUgCUCGACCGGCgcgGgCCGGGCg- -3'
miRNA:   3'- -ACGGgGGGCUGGUCGa--CgGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 55563 0.69 0.527147
Target:  5'- gGCCUCUCGGCCaaGGcCUGCCgGcGGCUGg -3'
miRNA:   3'- aCGGGGGGCUGG--UC-GACGGgC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 58716 0.73 0.294008
Target:  5'- cGCCCgCCCGGCCGGCcGCCCu----- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGaCGGGcuugac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.