miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 102059 0.68 0.565015
Target:  5'- aGUCCCaCGACagCAGCUcgacCCCGAGCUGg -3'
miRNA:   3'- aCGGGGgGCUG--GUCGAc---GGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 103932 0.66 0.652106
Target:  5'- gGCCUgCgCGACCAGUccgcaccucaUGUCCGAcCUGg -3'
miRNA:   3'- aCGGGgG-GCUGGUCG----------ACGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 104231 0.7 0.454634
Target:  5'- cGaCCUCCUGcGCCGcCUGUCCGAGCUGa -3'
miRNA:   3'- aC-GGGGGGC-UGGUcGACGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 109194 0.68 0.536533
Target:  5'- gGCCCgagCCCGACCGGUUGgaaCGAGCg- -3'
miRNA:   3'- aCGGG---GGGCUGGUCGACgg-GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109242 0.66 0.671474
Target:  5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109337 0.68 0.536533
Target:  5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3'
miRNA:   3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109410 0.66 0.671474
Target:  5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109505 0.68 0.536533
Target:  5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3'
miRNA:   3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109554 0.71 0.395855
Target:  5'- gGCCCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109602 0.66 0.671474
Target:  5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109697 0.68 0.536533
Target:  5'- gGCCaCgCCCGACCGGaUGCcCCGGGCc- -3'
miRNA:   3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 109746 0.71 0.395855
Target:  5'- gGCCCgagCCCGACCGGaUGCuCCGGACc- -3'
miRNA:   3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 110634 0.68 0.535592
Target:  5'- gGCCCCgcucggcUCGACCAGCUGCCgaccaGAAg-- -3'
miRNA:   3'- aCGGGG-------GGCUGGUCGACGGg----CUUgac -5'
10919 5' -62.3 NC_002794.1 + 115406 0.67 0.603555
Target:  5'- gGCCCgUcggCGGCCcGCUGCCCgucuuccgcgucGAGCUGg -3'
miRNA:   3'- aCGGGgG---GCUGGuCGACGGG------------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 118559 0.66 0.681119
Target:  5'- cUGCUgCCCGACCGccacgaacGcCUGCCCcugggcaucGAGCUGc -3'
miRNA:   3'- -ACGGgGGGCUGGU--------C-GACGGG---------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 118736 0.78 0.145821
Target:  5'- cGCUCCCCgGACCAGCUGgCCGAAg-- -3'
miRNA:   3'- aCGGGGGG-CUGGUCGACgGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 118900 0.69 0.508566
Target:  5'- cGCCgUCCGGCCGGCccgccgaGCUCGAcCUGg -3'
miRNA:   3'- aCGGgGGGCUGGUCGa------CGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 119736 0.66 0.652106
Target:  5'- cGCCCUCUGACC-GC--CCCGcAGCUGu -3'
miRNA:   3'- aCGGGGGGCUGGuCGacGGGC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 120580 0.68 0.536533
Target:  5'- cGCCCaCCCGGCCGGCcgGCgCCucGCc- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGa-CG-GGcuUGac -5'
10919 5' -62.3 NC_002794.1 + 121830 0.68 0.584222
Target:  5'- cGCCaCCCCGGCCcccgAGC--CCCGAGCc- -3'
miRNA:   3'- aCGG-GGGGCUGG----UCGacGGGCUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.