miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 122069 0.69 0.480334
Target:  5'- cUGCUguacccguCCCCGACCAccgccccGCUGCCCcaccacacggugGAGCUGu -3'
miRNA:   3'- -ACGG--------GGGGCUGGU-------CGACGGG------------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 124063 0.66 0.690727
Target:  5'- cGCCCCCCGGCgGGCgcgGCgaGGcCg- -3'
miRNA:   3'- aCGGGGGGCUGgUCGa--CGggCUuGac -5'
10919 5' -62.3 NC_002794.1 + 126045 0.75 0.218828
Target:  5'- cGCCgCCgCGACCGGCguccGCCCGGuccGCUGg -3'
miRNA:   3'- aCGGgGG-GCUGGUCGa---CGGGCU---UGAC- -5'
10919 5' -62.3 NC_002794.1 + 127478 0.73 0.300556
Target:  5'- cGCCCCCCGACCuGCU-CCgCGAcgGCa- -3'
miRNA:   3'- aCGGGGGGCUGGuCGAcGG-GCU--UGac -5'
10919 5' -62.3 NC_002794.1 + 127616 0.67 0.622963
Target:  5'- aGCgCCCCGACCucccccuccugcAGCUGUUCGAcgaGCa- -3'
miRNA:   3'- aCGgGGGGCUGG------------UCGACGGGCU---UGac -5'
10919 5' -62.3 NC_002794.1 + 128040 0.68 0.555471
Target:  5'- aGCCCCCCacguaGACCGGCccgccgucGCCCGGc--- -3'
miRNA:   3'- aCGGGGGG-----CUGGUCGa-------CGGGCUugac -5'
10919 5' -62.3 NC_002794.1 + 128397 0.66 0.690727
Target:  5'- cGCaCUCgCCGACCAGC-GCgCGA-CUGg -3'
miRNA:   3'- aCG-GGG-GGCUGGUCGaCGgGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 131665 0.68 0.584222
Target:  5'- cUGCagCCCGACCAGUacagcggGCCCaucGAACUGc -3'
miRNA:   3'- -ACGggGGGCUGGUCGa------CGGG---CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 131933 0.67 0.593876
Target:  5'- cGCCgCCCGGCCGGCgagucucgaGUCCGAc--- -3'
miRNA:   3'- aCGGgGGGCUGGUCGa--------CGGGCUugac -5'
10919 5' -62.3 NC_002794.1 + 133295 0.66 0.671474
Target:  5'- cGCCCCCCGAcgaacCCAGCgccgccGCCgCcGACg- -3'
miRNA:   3'- aCGGGGGGCU-----GGUCGa-----CGG-GcUUGac -5'
10919 5' -62.3 NC_002794.1 + 133533 0.67 0.642397
Target:  5'- cGCCCCUCG-CUGGCggaGCCCGcGCc- -3'
miRNA:   3'- aCGGGGGGCuGGUCGa--CGGGCuUGac -5'
10919 5' -62.3 NC_002794.1 + 133903 0.71 0.412149
Target:  5'- cGCCCCCgaGGCCAGCgGCCgCcuGCUGc -3'
miRNA:   3'- aCGGGGGg-CUGGUCGaCGG-GcuUGAC- -5'
10919 5' -62.3 NC_002794.1 + 134514 0.67 0.622963
Target:  5'- cGCUCCCCGAcguCCAgcucgacgagccGCUGCUCGAcgaGCUc -3'
miRNA:   3'- aCGGGGGGCU---GGU------------CGACGGGCU---UGAc -5'
10919 5' -62.3 NC_002794.1 + 134713 0.69 0.516895
Target:  5'- cUGCCgCCCGACCccgAGCgcgcgGUCCGGaucggcgGCUGg -3'
miRNA:   3'- -ACGGgGGGCUGG---UCGa----CGGGCU-------UGAC- -5'
10919 5' -62.3 NC_002794.1 + 135767 0.71 0.395855
Target:  5'- gUGCUCCaCGGCCAGCUGgCCGu-CUGc -3'
miRNA:   3'- -ACGGGGgGCUGGUCGACgGGCuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 137176 0.73 0.281245
Target:  5'- cGCgCacuaCCG-CCAGCUGCUCGGGCUGg -3'
miRNA:   3'- aCGgGg---GGCuGGUCGACGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 137508 0.66 0.700291
Target:  5'- cUGCCgCUCGGCCuGGCgccGCCCGA-CUu -3'
miRNA:   3'- -ACGGgGGGCUGG-UCGa--CGGGCUuGAc -5'
10919 5' -62.3 NC_002794.1 + 138811 0.66 0.700291
Target:  5'- cGCUCCUCGACCGcCUGCUCaacCUGg -3'
miRNA:   3'- aCGGGGGGCUGGUcGACGGGcuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 143242 0.69 0.475852
Target:  5'- cGCCCgCCCGACCgccgccgcgucgaacGGgaGCCgGAGCg- -3'
miRNA:   3'- aCGGG-GGGCUGG---------------UCgaCGGgCUUGac -5'
10919 5' -62.3 NC_002794.1 + 144486 0.69 0.481234
Target:  5'- cGCCCCguCCGGCCGGCgacagGCgcccuCCGGGCUc -3'
miRNA:   3'- aCGGGG--GGCUGGUCGa----CG-----GGCUUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.