miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 144573 0.68 0.565015
Target:  5'- gGCCCgCCCGaACgGGCagGCUCGAACc- -3'
miRNA:   3'- aCGGG-GGGC-UGgUCGa-CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 144958 0.73 0.307217
Target:  5'- -aCCCgCCGAcuCCAGCUGCCgGAGCUc -3'
miRNA:   3'- acGGGgGGCU--GGUCGACGGgCUUGAc -5'
10919 5' -62.3 NC_002794.1 + 146395 0.68 0.5746
Target:  5'- cGCCgCCgUGACCGGCcGCCgCGGGuCUGu -3'
miRNA:   3'- aCGG-GGgGCUGGUCGaCGG-GCUU-GAC- -5'
10919 5' -62.3 NC_002794.1 + 148346 0.66 0.661801
Target:  5'- cUGCUCCuuGAacggcaCCGGCUGCCCucGCc- -3'
miRNA:   3'- -ACGGGGggCU------GGUCGACGGGcuUGac -5'
10919 5' -62.3 NC_002794.1 + 149647 0.66 0.700291
Target:  5'- cGCCgUUCCGGCCAGCUcGUCC-AGCUc -3'
miRNA:   3'- aCGG-GGGGCUGGUCGA-CGGGcUUGAc -5'
10919 5' -62.3 NC_002794.1 + 151460 0.68 0.564058
Target:  5'- cGCCCguuccggUCUGACCGGCcgGCgCCGAGCg- -3'
miRNA:   3'- aCGGG-------GGGCUGGUCGa-CG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 152070 0.67 0.622963
Target:  5'- cGCCCCgcguCCGACCcGCcGCuCCGGGCc- -3'
miRNA:   3'- aCGGGG----GGCUGGuCGaCG-GGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 153939 0.67 0.603555
Target:  5'- aGCCCCUCG-UgGGCcaGCCCGAAgUGc -3'
miRNA:   3'- aCGGGGGGCuGgUCGa-CGGGCUUgAC- -5'
10919 5' -62.3 NC_002794.1 + 157310 0.68 0.545976
Target:  5'- cGCCUCCCcGCCAGaaGCCCGccGGCg- -3'
miRNA:   3'- aCGGGGGGcUGGUCgaCGGGC--UUGac -5'
10919 5' -62.3 NC_002794.1 + 157439 0.67 0.63268
Target:  5'- cGCUCgCCGACUccauGGCggcgGgCCGGACUGa -3'
miRNA:   3'- aCGGGgGGCUGG----UCGa---CgGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 159831 0.72 0.349541
Target:  5'- cGCCgUCCGGcCCGGCcGCCCGAAUa- -3'
miRNA:   3'- aCGGgGGGCU-GGUCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 160050 0.66 0.690727
Target:  5'- cGCCCCCgGACCcgguuuccgGGCcgccGCCaCGAACc- -3'
miRNA:   3'- aCGGGGGgCUGG---------UCGa---CGG-GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 160437 0.67 0.603555
Target:  5'- cGCCCUggaCGACaugcuaaagcuCAGCUGCCUGcGGCUGa -3'
miRNA:   3'- aCGGGGg--GCUG-----------GUCGACGGGC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 161032 0.66 0.661801
Target:  5'- -aCCCCCUcGCCGGC-GCCgGAGCg- -3'
miRNA:   3'- acGGGGGGcUGGUCGaCGGgCUUGac -5'
10919 5' -62.3 NC_002794.1 + 161293 0.68 0.555471
Target:  5'- cGUUCCUCGugUcgauccugcGGCUGCCCGAGUUGg -3'
miRNA:   3'- aCGGGGGGCugG---------UCGACGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 164087 0.67 0.642397
Target:  5'- aUGUgCUCCGGggUCAGCgguaGCCCGAACUc -3'
miRNA:   3'- -ACGgGGGGCU--GGUCGa---CGGGCUUGAc -5'
10919 5' -62.3 NC_002794.1 + 164444 0.68 0.555471
Target:  5'- cGCCCgCCgccuucguCGACCAGCUGCUCcacCUGg -3'
miRNA:   3'- aCGGG-GG--------GCUGGUCGACGGGcuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 171803 0.66 0.670508
Target:  5'- cGCCCgCCCcgGACCAcacccguGC-GCCCGGGCg- -3'
miRNA:   3'- aCGGG-GGG--CUGGU-------CGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 172205 0.73 0.307217
Target:  5'- cGCCCCCCGAgcgaCCGGCggaaagugucCCCGAACa- -3'
miRNA:   3'- aCGGGGGGCU----GGUCGac--------GGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 172254 0.7 0.42045
Target:  5'- cGCCgaCCCGACCccgcgGGC-GCCCGGACg- -3'
miRNA:   3'- aCGGg-GGGCUGG-----UCGaCGGGCUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.