miRNA display CGI


Results 101 - 111 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 175252 0.73 0.320876
Target:  5'- gUGCCCggcuucgagaugCCCGGcuCCGGCUGCCuCGAcgGCUGg -3'
miRNA:   3'- -ACGGG------------GGGCU--GGUCGACGG-GCU--UGAC- -5'
10919 5' -62.3 NC_002794.1 + 175522 0.66 0.681119
Target:  5'- cGCUuuCUCCGGCuCAGCcGCUuCGAGCUGg -3'
miRNA:   3'- aCGG--GGGGCUG-GUCGaCGG-GCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 175885 0.66 0.681119
Target:  5'- gGCCgCCCuuCgGGCUGUCCGucCUGg -3'
miRNA:   3'- aCGGgGGGcuGgUCGACGGGCuuGAC- -5'
10919 5' -62.3 NC_002794.1 + 176433 0.66 0.690727
Target:  5'- cGCCCUCCuccgcGACCAGgc-CCCGAGCg- -3'
miRNA:   3'- aCGGGGGG-----CUGGUCgacGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 176955 0.73 0.300556
Target:  5'- -cCUCCCCGA-CGGC-GCCCGGACUGg -3'
miRNA:   3'- acGGGGGGCUgGUCGaCGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 177939 0.72 0.349541
Target:  5'- aGCUCaccaCCGGCCGGCUcCCCGAcCUGg -3'
miRNA:   3'- aCGGGg---GGCUGGUCGAcGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 180639 0.67 0.603555
Target:  5'- cGUCCCCCGuCCgcgGGCUGCCgGucCUc -3'
miRNA:   3'- aCGGGGGGCuGG---UCGACGGgCuuGAc -5'
10919 5' -62.3 NC_002794.1 + 181043 0.66 0.658895
Target:  5'- cGCCCCgCGAUC-GCUaucuuucuccgcgaGCCCGGACc- -3'
miRNA:   3'- aCGGGGgGCUGGuCGA--------------CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 183351 0.68 0.545976
Target:  5'- aGCCgCUCGACCGGCgGCUgggUGGAUUGg -3'
miRNA:   3'- aCGGgGGGCUGGUCGaCGG---GCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 184550 0.68 0.565015
Target:  5'- gGUCUUCgUGGCCAGCgcgaGCCCGAACg- -3'
miRNA:   3'- aCGGGGG-GCUGGUCGa---CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 187000 0.66 0.659864
Target:  5'- cGaCCCCCugcgaguuccucaCGGCCAGCcGCCUcugucugGAACUGa -3'
miRNA:   3'- aC-GGGGG-------------GCUGGUCGaCGGG-------CUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.