Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 159831 | 0.72 | 0.349541 |
Target: 5'- cGCCgUCCGGcCCGGCcGCCCGAAUa- -3' miRNA: 3'- aCGGgGGGCU-GGUCGaCGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 157439 | 0.67 | 0.63268 |
Target: 5'- cGCUCgCCGACUccauGGCggcgGgCCGGACUGa -3' miRNA: 3'- aCGGGgGGCUGG----UCGa---CgGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 157310 | 0.68 | 0.545976 |
Target: 5'- cGCCUCCCcGCCAGaaGCCCGccGGCg- -3' miRNA: 3'- aCGGGGGGcUGGUCgaCGGGC--UUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 153939 | 0.67 | 0.603555 |
Target: 5'- aGCCCCUCG-UgGGCcaGCCCGAAgUGc -3' miRNA: 3'- aCGGGGGGCuGgUCGa-CGGGCUUgAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 152070 | 0.67 | 0.622963 |
Target: 5'- cGCCCCgcguCCGACCcGCcGCuCCGGGCc- -3' miRNA: 3'- aCGGGG----GGCUGGuCGaCG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 151460 | 0.68 | 0.564058 |
Target: 5'- cGCCCguuccggUCUGACCGGCcgGCgCCGAGCg- -3' miRNA: 3'- aCGGG-------GGGCUGGUCGa-CG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 149647 | 0.66 | 0.700291 |
Target: 5'- cGCCgUUCCGGCCAGCUcGUCC-AGCUc -3' miRNA: 3'- aCGG-GGGGCUGGUCGA-CGGGcUUGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 148346 | 0.66 | 0.661801 |
Target: 5'- cUGCUCCuuGAacggcaCCGGCUGCCCucGCc- -3' miRNA: 3'- -ACGGGGggCU------GGUCGACGGGcuUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 146395 | 0.68 | 0.5746 |
Target: 5'- cGCCgCCgUGACCGGCcGCCgCGGGuCUGu -3' miRNA: 3'- aCGG-GGgGCUGGUCGaCGG-GCUU-GAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 144958 | 0.73 | 0.307217 |
Target: 5'- -aCCCgCCGAcuCCAGCUGCCgGAGCUc -3' miRNA: 3'- acGGGgGGCU--GGUCGACGGgCUUGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 144573 | 0.68 | 0.565015 |
Target: 5'- gGCCCgCCCGaACgGGCagGCUCGAACc- -3' miRNA: 3'- aCGGG-GGGC-UGgUCGa-CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 144486 | 0.69 | 0.481234 |
Target: 5'- cGCCCCguCCGGCCGGCgacagGCgcccuCCGGGCUc -3' miRNA: 3'- aCGGGG--GGCUGGUCGa----CG-----GGCUUGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 143242 | 0.69 | 0.475852 |
Target: 5'- cGCCCgCCCGACCgccgccgcgucgaacGGgaGCCgGAGCg- -3' miRNA: 3'- aCGGG-GGGCUGG---------------UCgaCGGgCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 138811 | 0.66 | 0.700291 |
Target: 5'- cGCUCCUCGACCGcCUGCUCaacCUGg -3' miRNA: 3'- aCGGGGGGCUGGUcGACGGGcuuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 137508 | 0.66 | 0.700291 |
Target: 5'- cUGCCgCUCGGCCuGGCgccGCCCGA-CUu -3' miRNA: 3'- -ACGGgGGGCUGG-UCGa--CGGGCUuGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 137176 | 0.73 | 0.281245 |
Target: 5'- cGCgCacuaCCG-CCAGCUGCUCGGGCUGg -3' miRNA: 3'- aCGgGg---GGCuGGUCGACGGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 135767 | 0.71 | 0.395855 |
Target: 5'- gUGCUCCaCGGCCAGCUGgCCGu-CUGc -3' miRNA: 3'- -ACGGGGgGCUGGUCGACgGGCuuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 134713 | 0.69 | 0.516895 |
Target: 5'- cUGCCgCCCGACCccgAGCgcgcgGUCCGGaucggcgGCUGg -3' miRNA: 3'- -ACGGgGGGCUGG---UCGa----CGGGCU-------UGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 134514 | 0.67 | 0.622963 |
Target: 5'- cGCUCCCCGAcguCCAgcucgacgagccGCUGCUCGAcgaGCUc -3' miRNA: 3'- aCGGGGGGCU---GGU------------CGACGGGCU---UGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 133903 | 0.71 | 0.412149 |
Target: 5'- cGCCCCCgaGGCCAGCgGCCgCcuGCUGc -3' miRNA: 3'- aCGGGGGg-CUGGUCGaCGG-GcuUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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