Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 133533 | 0.67 | 0.642397 |
Target: 5'- cGCCCCUCG-CUGGCggaGCCCGcGCc- -3' miRNA: 3'- aCGGGGGGCuGGUCGa--CGGGCuUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 133295 | 0.66 | 0.671474 |
Target: 5'- cGCCCCCCGAcgaacCCAGCgccgccGCCgCcGACg- -3' miRNA: 3'- aCGGGGGGCU-----GGUCGa-----CGG-GcUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 131933 | 0.67 | 0.593876 |
Target: 5'- cGCCgCCCGGCCGGCgagucucgaGUCCGAc--- -3' miRNA: 3'- aCGGgGGGCUGGUCGa--------CGGGCUugac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 131665 | 0.68 | 0.584222 |
Target: 5'- cUGCagCCCGACCAGUacagcggGCCCaucGAACUGc -3' miRNA: 3'- -ACGggGGGCUGGUCGa------CGGG---CUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 128397 | 0.66 | 0.690727 |
Target: 5'- cGCaCUCgCCGACCAGC-GCgCGA-CUGg -3' miRNA: 3'- aCG-GGG-GGCUGGUCGaCGgGCUuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 128040 | 0.68 | 0.555471 |
Target: 5'- aGCCCCCCacguaGACCGGCccgccgucGCCCGGc--- -3' miRNA: 3'- aCGGGGGG-----CUGGUCGa-------CGGGCUugac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 127616 | 0.67 | 0.622963 |
Target: 5'- aGCgCCCCGACCucccccuccugcAGCUGUUCGAcgaGCa- -3' miRNA: 3'- aCGgGGGGCUGG------------UCGACGGGCU---UGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 127478 | 0.73 | 0.300556 |
Target: 5'- cGCCCCCCGACCuGCU-CCgCGAcgGCa- -3' miRNA: 3'- aCGGGGGGCUGGuCGAcGG-GCU--UGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 126045 | 0.75 | 0.218828 |
Target: 5'- cGCCgCCgCGACCGGCguccGCCCGGuccGCUGg -3' miRNA: 3'- aCGGgGG-GCUGGUCGa---CGGGCU---UGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 124063 | 0.66 | 0.690727 |
Target: 5'- cGCCCCCCGGCgGGCgcgGCgaGGcCg- -3' miRNA: 3'- aCGGGGGGCUGgUCGa--CGggCUuGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 122069 | 0.69 | 0.480334 |
Target: 5'- cUGCUguacccguCCCCGACCAccgccccGCUGCCCcaccacacggugGAGCUGu -3' miRNA: 3'- -ACGG--------GGGGCUGGU-------CGACGGG------------CUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 121830 | 0.68 | 0.584222 |
Target: 5'- cGCCaCCCCGGCCcccgAGC--CCCGAGCc- -3' miRNA: 3'- aCGG-GGGGCUGG----UCGacGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 120580 | 0.68 | 0.536533 |
Target: 5'- cGCCCaCCCGGCCGGCcgGCgCCucGCc- -3' miRNA: 3'- aCGGG-GGGCUGGUCGa-CG-GGcuUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 119736 | 0.66 | 0.652106 |
Target: 5'- cGCCCUCUGACC-GC--CCCGcAGCUGu -3' miRNA: 3'- aCGGGGGGCUGGuCGacGGGC-UUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 118900 | 0.69 | 0.508566 |
Target: 5'- cGCCgUCCGGCCGGCccgccgaGCUCGAcCUGg -3' miRNA: 3'- aCGGgGGGCUGGUCGa------CGGGCUuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 118736 | 0.78 | 0.145821 |
Target: 5'- cGCUCCCCgGACCAGCUGgCCGAAg-- -3' miRNA: 3'- aCGGGGGG-CUGGUCGACgGGCUUgac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 118559 | 0.66 | 0.681119 |
Target: 5'- cUGCUgCCCGACCGccacgaacGcCUGCCCcugggcaucGAGCUGc -3' miRNA: 3'- -ACGGgGGGCUGGU--------C-GACGGG---------CUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 115406 | 0.67 | 0.603555 |
Target: 5'- gGCCCgUcggCGGCCcGCUGCCCgucuuccgcgucGAGCUGg -3' miRNA: 3'- aCGGGgG---GCUGGuCGACGGG------------CUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 110634 | 0.68 | 0.535592 |
Target: 5'- gGCCCCgcucggcUCGACCAGCUGCCgaccaGAAg-- -3' miRNA: 3'- aCGGGG-------GGCUGGUCGACGGg----CUUgac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109746 | 0.71 | 0.395855 |
Target: 5'- gGCCCgagCCCGACCGGaUGCuCCGGACc- -3' miRNA: 3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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