Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 109697 | 0.68 | 0.536533 |
Target: 5'- gGCCaCgCCCGACCGGaUGCcCCGGGCc- -3' miRNA: 3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109602 | 0.66 | 0.671474 |
Target: 5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3' miRNA: 3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109554 | 0.71 | 0.395855 |
Target: 5'- gGCCCgagCCCGACCGGaUGCuCCGGACc- -3' miRNA: 3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109505 | 0.68 | 0.536533 |
Target: 5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3' miRNA: 3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109410 | 0.66 | 0.671474 |
Target: 5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3' miRNA: 3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109337 | 0.68 | 0.536533 |
Target: 5'- gGCCgCgCCCGACCGGaUGCcCCGGGCc- -3' miRNA: 3'- aCGG-G-GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109242 | 0.66 | 0.671474 |
Target: 5'- gGCUCgagCCCGACCGGaUGCuCCGGACc- -3' miRNA: 3'- aCGGG---GGGCUGGUCgACG-GGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 109194 | 0.68 | 0.536533 |
Target: 5'- gGCCCgagCCCGACCGGUUGgaaCGAGCg- -3' miRNA: 3'- aCGGG---GGGCUGGUCGACgg-GCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 104231 | 0.7 | 0.454634 |
Target: 5'- cGaCCUCCUGcGCCGcCUGUCCGAGCUGa -3' miRNA: 3'- aC-GGGGGGC-UGGUcGACGGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 103932 | 0.66 | 0.652106 |
Target: 5'- gGCCUgCgCGACCAGUccgcaccucaUGUCCGAcCUGg -3' miRNA: 3'- aCGGGgG-GCUGGUCG----------ACGGGCUuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 102059 | 0.68 | 0.565015 |
Target: 5'- aGUCCCaCGACagCAGCUcgacCCCGAGCUGg -3' miRNA: 3'- aCGGGGgGCUG--GUCGAc---GGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 99668 | 0.67 | 0.63268 |
Target: 5'- cGCCUgCCGGCCgAGUcccUGCCgGcGCUGg -3' miRNA: 3'- aCGGGgGGCUGG-UCG---ACGGgCuUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 94381 | 0.73 | 0.307217 |
Target: 5'- cGCCCgCCCGaaacGCCGGCggccgGUCCGAGCg- -3' miRNA: 3'- aCGGG-GGGC----UGGUCGa----CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 94192 | 0.66 | 0.661801 |
Target: 5'- aGCCCgUCCGaaacGCCGGCggagcgcgaGCCCGAGCc- -3' miRNA: 3'- aCGGG-GGGC----UGGUCGa--------CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 91593 | 0.66 | 0.681119 |
Target: 5'- aGCCgCUCGGCCGGCaccgUGC-CGAACa- -3' miRNA: 3'- aCGGgGGGCUGGUCG----ACGgGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 91444 | 0.67 | 0.613253 |
Target: 5'- gGCCucggCCUCGGCC-GCcgGCCCGGACg- -3' miRNA: 3'- aCGG----GGGGCUGGuCGa-CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 84472 | 0.69 | 0.472281 |
Target: 5'- cUGCaCCUCCGGCCAGC-GCUCGGGg-- -3' miRNA: 3'- -ACG-GGGGGCUGGUCGaCGGGCUUgac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 83806 | 0.68 | 0.5746 |
Target: 5'- gUGCCCUCCucgggcGCCAGCUGCagCCGAGu-- -3' miRNA: 3'- -ACGGGGGGc-----UGGUCGACG--GGCUUgac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 82590 | 0.72 | 0.334984 |
Target: 5'- cGCCCgCUCGGCCAGCU-CCCGcguCUGc -3' miRNA: 3'- aCGGG-GGGCUGGUCGAcGGGCuu-GAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 82334 | 0.67 | 0.613253 |
Target: 5'- aGCUCCgCCGGCuCGGCgucgccgGCCCGGAg-- -3' miRNA: 3'- aCGGGG-GGCUG-GUCGa------CGGGCUUgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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