miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 81432 0.71 0.379983
Target:  5'- aGCCCgCgGACCAGCUGCCgcacguCGugguGCUGu -3'
miRNA:   3'- aCGGGgGgCUGGUCGACGG------GCu---UGAC- -5'
10919 5' -62.3 NC_002794.1 + 78457 0.66 0.660832
Target:  5'- gGCCUCCaccgucgCGACCcGCUGCagGAGCUGc -3'
miRNA:   3'- aCGGGGG-------GCUGGuCGACGggCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 78325 0.66 0.690727
Target:  5'- cUGCUCCagguugCCGugCAGCaGCUCGAGCc- -3'
miRNA:   3'- -ACGGGG------GGCugGUCGaCGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 77161 0.68 0.565015
Target:  5'- aGCgCCCaggagcgcaugaUGGCCAGCUGCgCGuACUGg -3'
miRNA:   3'- aCGgGGG------------GCUGGUCGACGgGCuUGAC- -5'
10919 5' -62.3 NC_002794.1 + 74991 0.66 0.671474
Target:  5'- aGCgCCUCGGCUGG-UGUCCGAACg- -3'
miRNA:   3'- aCGgGGGGCUGGUCgACGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 74064 0.66 0.681119
Target:  5'- gGCCaCCgCGACCGGCcggcGCCUGccGCUGc -3'
miRNA:   3'- aCGG-GGgGCUGGUCGa---CGGGCu-UGAC- -5'
10919 5' -62.3 NC_002794.1 + 72831 0.68 0.565015
Target:  5'- gUGUUCCCCGACaacguCGGCguguacgGCCCGcuGCUGg -3'
miRNA:   3'- -ACGGGGGGCUG-----GUCGa------CGGGCu-UGAC- -5'
10919 5' -62.3 NC_002794.1 + 72273 0.68 0.5746
Target:  5'- cGCCgCCCGugCAGCgucCCgGAACg- -3'
miRNA:   3'- aCGGgGGGCugGUCGac-GGgCUUGac -5'
10919 5' -62.3 NC_002794.1 + 71992 0.71 0.38549
Target:  5'- gUGCUCgCCGAgcggguCCAGCUgcugcguuccgcccGCCCGAGCUGc -3'
miRNA:   3'- -ACGGGgGGCU------GGUCGA--------------CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 68779 0.67 0.63268
Target:  5'- cGCCCgCCgGACCGGCUGga-GAGCg- -3'
miRNA:   3'- aCGGG-GGgCUGGUCGACgggCUUGac -5'
10919 5' -62.3 NC_002794.1 + 58755 0.67 0.603555
Target:  5'- cGCUCCUuccgCGACCucccGCCCGAACUGu -3'
miRNA:   3'- aCGGGGG----GCUGGucgaCGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 58716 0.73 0.294008
Target:  5'- cGCCCgCCCGGCCGGCcGCCCu----- -3'
miRNA:   3'- aCGGG-GGGCUGGUCGaCGGGcuugac -5'
10919 5' -62.3 NC_002794.1 + 55563 0.69 0.527147
Target:  5'- gGCCUCUCGGCCaaGGcCUGCCgGcGGCUGg -3'
miRNA:   3'- aCGGGGGGCUGG--UC-GACGGgC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 52461 0.69 0.508566
Target:  5'- cUGCUgCUCGACCGGCgcgGgCCGGGCg- -3'
miRNA:   3'- -ACGGgGGGCUGGUCGa--CgGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 50526 0.71 0.372208
Target:  5'- gGCgCUCgGGCCcgAGCggGCCCGAGCUGg -3'
miRNA:   3'- aCGgGGGgCUGG--UCGa-CGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 50313 0.66 0.699337
Target:  5'- cGCCCcgagcggCCCGACCGGUUcGCggaCGAGCg- -3'
miRNA:   3'- aCGGG-------GGGCUGGUCGA-CGg--GCUUGac -5'
10919 5' -62.3 NC_002794.1 + 48711 0.66 0.652106
Target:  5'- gGCCCCggggCCGcgaggGCCAGCUGgaCCGA-CUGa -3'
miRNA:   3'- aCGGGG----GGC-----UGGUCGACg-GGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 45659 0.71 0.372208
Target:  5'- gGCCUCacgaCGAgCGGCUGCugCCGAGCUGc -3'
miRNA:   3'- aCGGGGg---GCUgGUCGACG--GGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 45058 0.67 0.613253
Target:  5'- gGCCCCgcggcggaCGGCCgAGCcGCUgGAGCUGa -3'
miRNA:   3'- aCGGGGg-------GCUGG-UCGaCGGgCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 44283 0.69 0.518753
Target:  5'- cGCCCCCCGGCgGcGCgcgccgccgccgcggGCCCGcgguuccucGGCUGa -3'
miRNA:   3'- aCGGGGGGCUGgU-CGa--------------CGGGC---------UUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.