miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10919 5' -62.3 NC_002794.1 + 127616 0.67 0.622963
Target:  5'- aGCgCCCCGACCucccccuccugcAGCUGUUCGAcgaGCa- -3'
miRNA:   3'- aCGgGGGGCUGG------------UCGACGGGCU---UGac -5'
10919 5' -62.3 NC_002794.1 + 82334 0.67 0.613253
Target:  5'- aGCUCCgCCGGCuCGGCgucgccgGCCCGGAg-- -3'
miRNA:   3'- aCGGGG-GGCUG-GUCGa------CGGGCUUgac -5'
10919 5' -62.3 NC_002794.1 + 45058 0.67 0.613253
Target:  5'- gGCCCCgcggcggaCGGCCgAGCcGCUgGAGCUGa -3'
miRNA:   3'- aCGGGGg-------GCUGG-UCGaCGGgCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 91444 0.67 0.613253
Target:  5'- gGCCucggCCUCGGCC-GCcgGCCCGGACg- -3'
miRNA:   3'- aCGG----GGGGCUGGuCGa-CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 58755 0.67 0.603555
Target:  5'- cGCUCCUuccgCGACCucccGCCCGAACUGu -3'
miRNA:   3'- aCGGGGG----GCUGGucgaCGGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 160437 0.67 0.603555
Target:  5'- cGCCCUggaCGACaugcuaaagcuCAGCUGCCUGcGGCUGa -3'
miRNA:   3'- aCGGGGg--GCUG-----------GUCGACGGGC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 153939 0.67 0.603555
Target:  5'- aGCCCCUCG-UgGGCcaGCCCGAAgUGc -3'
miRNA:   3'- aCGGGGGGCuGgUCGa-CGGGCUUgAC- -5'
10919 5' -62.3 NC_002794.1 + 99668 0.67 0.63268
Target:  5'- cGCCUgCCGGCCgAGUcccUGCCgGcGCUGg -3'
miRNA:   3'- aCGGGgGGCUGG-UCG---ACGGgCuUGAC- -5'
10919 5' -62.3 NC_002794.1 + 157439 0.67 0.63268
Target:  5'- cGCUCgCCGACUccauGGCggcgGgCCGGACUGa -3'
miRNA:   3'- aCGGGgGGCUGG----UCGa---CgGGCUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 43685 0.67 0.63268
Target:  5'- cGCCgaCCUGugCAGCUaCCUGAACa- -3'
miRNA:   3'- aCGGg-GGGCugGUCGAcGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 11648 0.66 0.661801
Target:  5'- cGCCCCCgaACCAGCU-CCCGGc--- -3'
miRNA:   3'- aCGGGGGgcUGGUCGAcGGGCUugac -5'
10919 5' -62.3 NC_002794.1 + 187000 0.66 0.659864
Target:  5'- cGaCCCCCugcgaguuccucaCGGCCAGCcGCCUcugucugGAACUGa -3'
miRNA:   3'- aC-GGGGG-------------GCUGGUCGaCGGG-------CUUGAC- -5'
10919 5' -62.3 NC_002794.1 + 119736 0.66 0.652106
Target:  5'- cGCCCUCUGACC-GC--CCCGcAGCUGu -3'
miRNA:   3'- aCGGGGGGCUGGuCGacGGGC-UUGAC- -5'
10919 5' -62.3 NC_002794.1 + 181043 0.66 0.658895
Target:  5'- cGCCCCgCGAUC-GCUaucuuucuccgcgaGCCCGGACc- -3'
miRNA:   3'- aCGGGGgGCUGGuCGA--------------CGGGCUUGac -5'
10919 5' -62.3 NC_002794.1 + 4220 0.66 0.652106
Target:  5'- cGCCUCgCCGuCCAGCaGCCCGccggggGACg- -3'
miRNA:   3'- aCGGGG-GGCuGGUCGaCGGGC------UUGac -5'
10919 5' -62.3 NC_002794.1 + 133533 0.67 0.642397
Target:  5'- cGCCCCUCG-CUGGCggaGCCCGcGCc- -3'
miRNA:   3'- aCGGGGGGCuGGUCGa--CGGGCuUGac -5'
10919 5' -62.3 NC_002794.1 + 103932 0.66 0.652106
Target:  5'- gGCCUgCgCGACCAGUccgcaccucaUGUCCGAcCUGg -3'
miRNA:   3'- aCGGGgG-GCUGGUCG----------ACGGGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 48711 0.66 0.652106
Target:  5'- gGCCCCggggCCGcgaggGCCAGCUGgaCCGA-CUGa -3'
miRNA:   3'- aCGGGG----GGC-----UGGUCGACg-GGCUuGAC- -5'
10919 5' -62.3 NC_002794.1 + 68779 0.67 0.63268
Target:  5'- cGCCCgCCgGACCGGCUGga-GAGCg- -3'
miRNA:   3'- aCGGG-GGgCUGGUCGACgggCUUGac -5'
10919 5' -62.3 NC_002794.1 + 164087 0.67 0.642397
Target:  5'- aUGUgCUCCGGggUCAGCgguaGCCCGAACUc -3'
miRNA:   3'- -ACGgGGGGCU--GGUCGa---CGGGCUUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.