Results 101 - 111 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10919 | 5' | -62.3 | NC_002794.1 | + | 4220 | 0.66 | 0.652106 |
Target: 5'- cGCCUCgCCGuCCAGCaGCCCGccggggGACg- -3' miRNA: 3'- aCGGGG-GGCuGGUCGaCGGGC------UUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 133533 | 0.67 | 0.642397 |
Target: 5'- cGCCCCUCG-CUGGCggaGCCCGcGCc- -3' miRNA: 3'- aCGGGGGGCuGGUCGa--CGGGCuUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 103932 | 0.66 | 0.652106 |
Target: 5'- gGCCUgCgCGACCAGUccgcaccucaUGUCCGAcCUGg -3' miRNA: 3'- aCGGGgG-GCUGGUCG----------ACGGGCUuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 48711 | 0.66 | 0.652106 |
Target: 5'- gGCCCCggggCCGcgaggGCCAGCUGgaCCGA-CUGa -3' miRNA: 3'- aCGGGG----GGC-----UGGUCGACg-GGCUuGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 68779 | 0.67 | 0.63268 |
Target: 5'- cGCCCgCCgGACCGGCUGga-GAGCg- -3' miRNA: 3'- aCGGG-GGgCUGGUCGACgggCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 164087 | 0.67 | 0.642397 |
Target: 5'- aUGUgCUCCGGggUCAGCgguaGCCCGAACUc -3' miRNA: 3'- -ACGgGGGGCU--GGUCGa---CGGGCUUGAc -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 43685 | 0.67 | 0.63268 |
Target: 5'- cGCCgaCCUGugCAGCUaCCUGAACa- -3' miRNA: 3'- aCGGg-GGGCugGUCGAcGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 157439 | 0.67 | 0.63268 |
Target: 5'- cGCUCgCCGACUccauGGCggcgGgCCGGACUGa -3' miRNA: 3'- aCGGGgGGCUGG----UCGa---CgGGCUUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 99668 | 0.67 | 0.63268 |
Target: 5'- cGCCUgCCGGCCgAGUcccUGCCgGcGCUGg -3' miRNA: 3'- aCGGGgGGCUGG-UCG---ACGGgCuUGAC- -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 5987 | 0.67 | 0.622963 |
Target: 5'- cGUCgCCgCCGACCGGCccGCUCGGGCc- -3' miRNA: 3'- aCGG-GG-GGCUGGUCGa-CGGGCUUGac -5' |
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10919 | 5' | -62.3 | NC_002794.1 | + | 121830 | 0.68 | 0.584222 |
Target: 5'- cGCCaCCCCGGCCcccgAGC--CCCGAGCc- -3' miRNA: 3'- aCGG-GGGGCUGG----UCGacGGGCUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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