miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1092 5' -43.6 NC_000929.1 + 27252 1.13 0.005583
Target:  5'- gGACAGUUACAGUUAACUGCCAUAACCc -3'
miRNA:   3'- -CUGUCAAUGUCAAUUGACGGUAUUGG- -5'
1092 5' -43.6 NC_000929.1 + 14444 0.7 0.962803
Target:  5'- gGACAGcaUACAGgc-GCUGCCAccacGCCa -3'
miRNA:   3'- -CUGUCa-AUGUCaauUGACGGUau--UGG- -5'
1092 5' -43.6 NC_000929.1 + 29611 0.69 0.979684
Target:  5'- gGGCGGUcGCGG-UAACUGUCAccccACCa -3'
miRNA:   3'- -CUGUCAaUGUCaAUUGACGGUau--UGG- -5'
1092 5' -43.6 NC_000929.1 + 12220 0.67 0.994901
Target:  5'- cACGGUgacCAGUUGcugcuCUGCCA--GCCa -3'
miRNA:   3'- cUGUCAau-GUCAAUu----GACGGUauUGG- -5'
1092 5' -43.6 NC_000929.1 + 27282 0.67 0.995746
Target:  5'- uGACGGUaGCAGauguGCUGCU--GGCCc -3'
miRNA:   3'- -CUGUCAaUGUCaau-UGACGGuaUUGG- -5'
1092 5' -43.6 NC_000929.1 + 14194 0.67 0.995746
Target:  5'- aGACGG--GCGGccu-CUGCCAgaUAACCg -3'
miRNA:   3'- -CUGUCaaUGUCaauuGACGGU--AUUGG- -5'
1092 5' -43.6 NC_000929.1 + 25597 0.66 0.996473
Target:  5'- aGCAGgcuUGCAGgcaguGCUGCCGggcAACUg -3'
miRNA:   3'- cUGUCa--AUGUCaau--UGACGGUa--UUGG- -5'
1092 5' -43.6 NC_000929.1 + 7970 0.66 0.998067
Target:  5'- uGACAGUUGCAGUUuuC-GCgGcGGCUu -3'
miRNA:   3'- -CUGUCAAUGUCAAuuGaCGgUaUUGG- -5'
1092 5' -43.6 NC_000929.1 + 20077 0.66 0.99844
Target:  5'- uGACGGUUACAGgUAGuCaGCgAcAACCa -3'
miRNA:   3'- -CUGUCAAUGUCaAUU-GaCGgUaUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.