miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10920 3' -57.5 NC_002794.1 + 146459 0.66 0.914284
Target:  5'- cCGUCGgccacgGcGGCCGCGGcGGCG-GCGGc -3'
miRNA:   3'- aGCAGCa-----C-CUGGCGCU-CCGCaUGCUu -5'
10920 3' -57.5 NC_002794.1 + 129939 0.66 0.914284
Target:  5'- gUCGUCGccGGCgGCGGuGGCGUcgGCGGc -3'
miRNA:   3'- -AGCAGCacCUGgCGCU-CCGCA--UGCUu -5'
10920 3' -57.5 NC_002794.1 + 100823 0.66 0.914284
Target:  5'- cUCGcCgGUGGcggcGCC-CGAGGCGUACGu- -3'
miRNA:   3'- -AGCaG-CACC----UGGcGCUCCGCAUGCuu -5'
10920 3' -57.5 NC_002794.1 + 62736 0.66 0.902481
Target:  5'- aUCGUUGcUGcGACgGCGAGagauCGUGCGAGa -3'
miRNA:   3'- -AGCAGC-AC-CUGgCGCUCc---GCAUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 183154 0.66 0.89625
Target:  5'- gUCGgcCGUGGGCUGCGcguuccgcGGCG-ACGAGg -3'
miRNA:   3'- -AGCa-GCACCUGGCGCu-------CCGCaUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 17441 0.66 0.889802
Target:  5'- gUGUCGcacGGACCGCGcgacGGGCGgugACGc- -3'
miRNA:   3'- aGCAGCa--CCUGGCGC----UCCGCa--UGCuu -5'
10920 3' -57.5 NC_002794.1 + 99955 0.66 0.889802
Target:  5'- aCGaCGUGGugCGgGAGGUGcACGu- -3'
miRNA:   3'- aGCaGCACCugGCgCUCCGCaUGCuu -5'
10920 3' -57.5 NC_002794.1 + 181093 0.66 0.883141
Target:  5'- cCGUCGaGG-CCGCuGAGGCcgGCGAGg -3'
miRNA:   3'- aGCAGCaCCuGGCG-CUCCGcaUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 5504 0.66 0.883141
Target:  5'- -gGUCGUcGGCCGCGcGGCGcaGCGGGu -3'
miRNA:   3'- agCAGCAcCUGGCGCuCCGCa-UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 52370 0.67 0.876272
Target:  5'- aUGUCGcUGG-CCGCGGGGCugcagAUGAGg -3'
miRNA:   3'- aGCAGC-ACCuGGCGCUCCGca---UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 130087 0.67 0.876272
Target:  5'- cCGUgGUGgGGCCGagcggaucacaCGAGGCGUugACGAc -3'
miRNA:   3'- aGCAgCAC-CUGGC-----------GCUCCGCA--UGCUu -5'
10920 3' -57.5 NC_002794.1 + 158593 0.67 0.854452
Target:  5'- cCGUCGgcGGGCgCGCGGgcgcGGCGUACa-- -3'
miRNA:   3'- aGCAGCa-CCUG-GCGCU----CCGCAUGcuu -5'
10920 3' -57.5 NC_002794.1 + 19574 0.67 0.854452
Target:  5'- aUGgcagCGaUGGcGCCGCGAGuucGCGUACGAAc -3'
miRNA:   3'- aGCa---GC-ACC-UGGCGCUC---CGCAUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 15917 0.67 0.854452
Target:  5'- aCGUCGcGGGCCG-GGGaGCGaGCGAc -3'
miRNA:   3'- aGCAGCaCCUGGCgCUC-CGCaUGCUu -5'
10920 3' -57.5 NC_002794.1 + 73543 0.67 0.854452
Target:  5'- cCGUCGccGugCGCGuGGCGUugGc- -3'
miRNA:   3'- aGCAGCacCugGCGCuCCGCAugCuu -5'
10920 3' -57.5 NC_002794.1 + 161008 0.67 0.846794
Target:  5'- gCGUCGgagcgGGcGCCGCG-GGCGccGCGGAc -3'
miRNA:   3'- aGCAGCa----CC-UGGCGCuCCGCa-UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 7621 0.68 0.830933
Target:  5'- gUCGUCGUcGACCgGCGGcGGCG-GCGGu -3'
miRNA:   3'- -AGCAGCAcCUGG-CGCU-CCGCaUGCUu -5'
10920 3' -57.5 NC_002794.1 + 185528 0.68 0.830933
Target:  5'- cCGUCGUcGGcGCCGCGAccgGGUG-ACGGAc -3'
miRNA:   3'- aGCAGCA-CC-UGGCGCU---CCGCaUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 104593 0.68 0.830933
Target:  5'- cCGuUCGUGGACCgGCGcGGCcuGUACGu- -3'
miRNA:   3'- aGC-AGCACCUGG-CGCuCCG--CAUGCuu -5'
10920 3' -57.5 NC_002794.1 + 105821 0.68 0.805886
Target:  5'- -aGUCGgacGGACgGCGAGGUGUucACGu- -3'
miRNA:   3'- agCAGCa--CCUGgCGCUCCGCA--UGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.